miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19697 5' -59.4 NC_004686.1 + 5092 0.67 0.455491
Target:  5'- aGGCuguccaGGUA-CAGCCucGCGGCGGAcgagaauGCCg -3'
miRNA:   3'- -CCGug----CCGUaGUCGG--CGCCGCUU-------CGG- -5'
19697 5' -59.4 NC_004686.1 + 1960 0.67 0.446898
Target:  5'- cGGUA-GGCGUUGGggcuguguuCCGCGGCGuacuGGCUg -3'
miRNA:   3'- -CCGUgCCGUAGUC---------GGCGCCGCu---UCGG- -5'
19697 5' -59.4 NC_004686.1 + 17658 0.67 0.446898
Target:  5'- cGCGCaGCAgugacgguUCGGgUGCGGCGAAGaUCg -3'
miRNA:   3'- cCGUGcCGU--------AGUCgGCGCCGCUUC-GG- -5'
19697 5' -59.4 NC_004686.1 + 3491 0.67 0.446898
Target:  5'- cGGCACGGCAacuacUCcuGGCU--GGUGGAGCg -3'
miRNA:   3'- -CCGUGCCGU-----AG--UCGGcgCCGCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 29819 0.67 0.44122
Target:  5'- cGGCGgGGUcgUAGCCcuugggcaggucgggGCGGgGGgugGGCCa -3'
miRNA:   3'- -CCGUgCCGuaGUCGG---------------CGCCgCU---UCGG- -5'
19697 5' -59.4 NC_004686.1 + 24342 0.67 0.437458
Target:  5'- cGGCAgCGGCGgacaAGgCGcCGuGUGGAGCCc -3'
miRNA:   3'- -CCGU-GCCGUag--UCgGC-GC-CGCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 10424 0.67 0.434648
Target:  5'- uGUugGGCGUCguuGGUgGUGGUGAauucggcggugacgGGCCg -3'
miRNA:   3'- cCGugCCGUAG---UCGgCGCCGCU--------------UCGG- -5'
19697 5' -59.4 NC_004686.1 + 43674 0.67 0.428133
Target:  5'- cGGC-UGGCuggCAGCCuGCGGCccagGAgguGGCCc -3'
miRNA:   3'- -CCGuGCCGua-GUCGG-CGCCG----CU---UCGG- -5'
19697 5' -59.4 NC_004686.1 + 43489 0.67 0.428133
Target:  5'- cGGCGCugucggugGGUAUC-GUCGCGacGCuGAAGCCg -3'
miRNA:   3'- -CCGUG--------CCGUAGuCGGCGC--CG-CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 18271 0.67 0.428133
Target:  5'- gGGUugGuGgGUCAGCacggcaGCGGgGcGAGCCu -3'
miRNA:   3'- -CCGugC-CgUAGUCGg-----CGCCgC-UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 7072 0.67 0.428133
Target:  5'- aGGCaaagGCGGUAUUGGguUUGCGGUGucGAGCCg -3'
miRNA:   3'- -CCG----UGCCGUAGUC--GGCGCCGC--UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 47822 0.67 0.428133
Target:  5'- uGGCGCGGgggcggauguCAUgAGCgGCGGCGAcaAGg- -3'
miRNA:   3'- -CCGUGCC----------GUAgUCGgCGCCGCU--UCgg -5'
19697 5' -59.4 NC_004686.1 + 5753 0.67 0.424436
Target:  5'- uGUACGGCAUCGGCaucaugucgaccgaUGCGuucgcugugguccGCGAcGCCg -3'
miRNA:   3'- cCGUGCCGUAGUCG--------------GCGC-------------CGCUuCGG- -5'
19697 5' -59.4 NC_004686.1 + 28753 0.68 0.400879
Target:  5'- uGGCGCGGCGcggguuGCCGaacaugagacccCGGCgGAAGUCg -3'
miRNA:   3'- -CCGUGCCGUagu---CGGC------------GCCG-CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 29126 0.68 0.392043
Target:  5'- cGGCGuCGGCG--GGCCGCGcuuGCGGAuGUCu -3'
miRNA:   3'- -CCGU-GCCGUagUCGGCGC---CGCUU-CGG- -5'
19697 5' -59.4 NC_004686.1 + 13677 0.68 0.392043
Target:  5'- uGUGCaGUugauUCAGCCGCGGCGcuGGUCc -3'
miRNA:   3'- cCGUGcCGu---AGUCGGCGCCGCu-UCGG- -5'
19697 5' -59.4 NC_004686.1 + 13178 0.68 0.392043
Target:  5'- uGUGCGGUAcgacUCGGCCcaGCGGUGAcaAGCa -3'
miRNA:   3'- cCGUGCCGU----AGUCGG--CGCCGCU--UCGg -5'
19697 5' -59.4 NC_004686.1 + 5268 0.68 0.383334
Target:  5'- cGGUGCGGCucuGUCGGguUCGcCGGCGAAGauCCu -3'
miRNA:   3'- -CCGUGCCG---UAGUC--GGC-GCCGCUUC--GG- -5'
19697 5' -59.4 NC_004686.1 + 21227 0.68 0.383334
Target:  5'- aGCugGGCgAUCGcGUCGCGGUau-GCCu -3'
miRNA:   3'- cCGugCCG-UAGU-CGGCGCCGcuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 5917 0.68 0.382471
Target:  5'- uGGC-CGGUggcuAUCGGCUGcCGGCGAaacgugcAGCg -3'
miRNA:   3'- -CCGuGCCG----UAGUCGGC-GCCGCU-------UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.