miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19698 3' -58.1 NC_004686.1 + 52425 0.66 0.578888
Target:  5'- uAACGCa-ACCAUugaaUGGUGCGGGCg-- -3'
miRNA:   3'- cUUGCGgcUGGUG----ACCACGUCCGagc -5'
19698 3' -58.1 NC_004686.1 + 1667 0.66 0.561791
Target:  5'- cGAACaacCCGACCACgagGGuUGCGuugucgacuuggggcGGCUCGc -3'
miRNA:   3'- -CUUGc--GGCUGGUGa--CC-ACGU---------------CCGAGC- -5'
19698 3' -58.1 NC_004686.1 + 17541 0.66 0.556476
Target:  5'- uGGCGCagcuguuUGGCCAgUUGGgGCGGGCUCa -3'
miRNA:   3'- cUUGCG-------GCUGGU-GACCaCGUCCGAGc -5'
19698 3' -58.1 NC_004686.1 + 10463 0.67 0.515584
Target:  5'- ---gGCCGGCCuugGGUGCGGGagcauUCGg -3'
miRNA:   3'- cuugCGGCUGGugaCCACGUCCg----AGC- -5'
19698 3' -58.1 NC_004686.1 + 10144 0.67 0.515584
Target:  5'- uGACGCCG-CC-UUGGgGC-GGCUCGg -3'
miRNA:   3'- cUUGCGGCuGGuGACCaCGuCCGAGC- -5'
19698 3' -58.1 NC_004686.1 + 44032 0.67 0.515584
Target:  5'- cGAACGCCG-CCGCUGGccccGC-GGCcUGa -3'
miRNA:   3'- -CUUGCGGCuGGUGACCa---CGuCCGaGC- -5'
19698 3' -58.1 NC_004686.1 + 29723 0.67 0.495084
Target:  5'- uGugGCCGAUgACgcgGGUgGCAGGCa-- -3'
miRNA:   3'- cUugCGGCUGgUGa--CCA-CGUCCGagc -5'
19698 3' -58.1 NC_004686.1 + 9439 0.68 0.445573
Target:  5'- aGAACGCagccGCCaagGCUGGUGCAGacgccGCUCa -3'
miRNA:   3'- -CUUGCGgc--UGG---UGACCACGUC-----CGAGc -5'
19698 3' -58.1 NC_004686.1 + 19021 0.68 0.426554
Target:  5'- cGAACGCguuUGACCugUucGGUGUGGGCgggUCGg -3'
miRNA:   3'- -CUUGCG---GCUGGugA--CCACGUCCG---AGC- -5'
19698 3' -58.1 NC_004686.1 + 28245 0.69 0.398952
Target:  5'- gGAGCGCCGACUuCUGGaaCGGuCUCGg -3'
miRNA:   3'- -CUUGCGGCUGGuGACCacGUCcGAGC- -5'
19698 3' -58.1 NC_004686.1 + 218 0.69 0.398952
Target:  5'- uGugGUCGACCAgugaggggUUGGUGUAGGCgaCGg -3'
miRNA:   3'- cUugCGGCUGGU--------GACCACGUCCGa-GC- -5'
19698 3' -58.1 NC_004686.1 + 2609 0.69 0.390008
Target:  5'- aGGACGCCuccgaGGCCACUGGUGaguGGaaUCGg -3'
miRNA:   3'- -CUUGCGG-----CUGGUGACCACgu-CCg-AGC- -5'
19698 3' -58.1 NC_004686.1 + 41780 0.69 0.390008
Target:  5'- cGGAUGUgaCGAUCGCUGGguUGUuGGCUCGg -3'
miRNA:   3'- -CUUGCG--GCUGGUGACC--ACGuCCGAGC- -5'
19698 3' -58.1 NC_004686.1 + 2657 0.72 0.239916
Target:  5'- --cUGCCGGCCGguUUGGuUGCGGGUUCGu -3'
miRNA:   3'- cuuGCGGCUGGU--GACC-ACGUCCGAGC- -5'
19698 3' -58.1 NC_004686.1 + 20983 0.73 0.205391
Target:  5'- cGGCGCCGAUCACUGGUauuGgGGGCgguaCGg -3'
miRNA:   3'- cUUGCGGCUGGUGACCA---CgUCCGa---GC- -5'
19698 3' -58.1 NC_004686.1 + 40126 1.07 0.000696
Target:  5'- uGAACGCCGACCACUGGUGCAGGCUCGc -3'
miRNA:   3'- -CUUGCGGCUGGUGACCACGUCCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.