miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19700 5' -58 NC_004686.1 + 21175 0.66 0.569273
Target:  5'- gCGCCGCgGGGGcUGGcacuGGUUCAGCGc- -3'
miRNA:   3'- -GCGGCGgUUCCuACU----UCGGGUCGCac -5'
19700 5' -58 NC_004686.1 + 39526 0.66 0.547945
Target:  5'- cCGCCGCUAcaGGGGUGucGCaugaGGCGg- -3'
miRNA:   3'- -GCGGCGGU--UCCUACuuCGgg--UCGCac -5'
19700 5' -58 NC_004686.1 + 43690 0.66 0.547944
Target:  5'- uGCgGCCcAGGAgguGGCCCuGCGg- -3'
miRNA:   3'- gCGgCGGuUCCUacuUCGGGuCGCac -5'
19700 5' -58 NC_004686.1 + 13687 0.66 0.547944
Target:  5'- -uUCGCCGGGGAUaauGCC-AGCGUGg -3'
miRNA:   3'- gcGGCGGUUCCUAcuuCGGgUCGCAC- -5'
19700 5' -58 NC_004686.1 + 35018 0.67 0.515415
Target:  5'- uCGCCGUCGAcacccuuGGG-GGAGCCCAGaacaugGUGg -3'
miRNA:   3'- -GCGGCGGUU-------CCUaCUUCGGGUCg-----CAC- -5'
19700 5' -58 NC_004686.1 + 26088 0.68 0.455871
Target:  5'- aCGCUGCCu-GGGUGGcagaacuccGGCCaCGGCGa- -3'
miRNA:   3'- -GCGGCGGuuCCUACU---------UCGG-GUCGCac -5'
19700 5' -58 NC_004686.1 + 48535 0.68 0.454893
Target:  5'- uGCUGCCGAGGGggaacagUGAAcCCCGaguuGCGUGc -3'
miRNA:   3'- gCGGCGGUUCCU-------ACUUcGGGU----CGCAC- -5'
19700 5' -58 NC_004686.1 + 5370 0.68 0.446144
Target:  5'- aCGUCGUCGGcGuUGAAGUCCAGCGg- -3'
miRNA:   3'- -GCGGCGGUUcCuACUUCGGGUCGCac -5'
19700 5' -58 NC_004686.1 + 7158 0.68 0.446144
Target:  5'- uGCCGCCGGGaAUGAacAGCCaCGGCcccucaGUGg -3'
miRNA:   3'- gCGGCGGUUCcUACU--UCGG-GUCG------CAC- -5'
19700 5' -58 NC_004686.1 + 9446 0.68 0.436535
Target:  5'- aGCCGCCAAGGcUGGugcagacgccGCUCAGgCGUa -3'
miRNA:   3'- gCGGCGGUUCCuACUu---------CGGGUC-GCAc -5'
19700 5' -58 NC_004686.1 + 7029 0.68 0.436535
Target:  5'- cCGCCGCgAAGGAUGuggcugccaGAGCCaacaAGCa-- -3'
miRNA:   3'- -GCGGCGgUUCCUAC---------UUCGGg---UCGcac -5'
19700 5' -58 NC_004686.1 + 10146 0.68 0.427045
Target:  5'- aCGCCGCCuuGGGgc-GGCUCGGCGc- -3'
miRNA:   3'- -GCGGCGGuuCCUacuUCGGGUCGCac -5'
19700 5' -58 NC_004686.1 + 13261 0.68 0.417679
Target:  5'- aGCCGCCGAGaGcccGggGCCUgcgguGGUGUGc -3'
miRNA:   3'- gCGGCGGUUC-Cua-CuuCGGG-----UCGCAC- -5'
19700 5' -58 NC_004686.1 + 18504 0.69 0.399328
Target:  5'- uGCCGCCAAGuc-GGAGCCgauuGGUGUGa -3'
miRNA:   3'- gCGGCGGUUCcuaCUUCGGg---UCGCAC- -5'
19700 5' -58 NC_004686.1 + 37370 0.69 0.399328
Target:  5'- uCGCCGC----GAUGAGGCagCAGCGUGa -3'
miRNA:   3'- -GCGGCGguucCUACUUCGg-GUCGCAC- -5'
19700 5' -58 NC_004686.1 + 5646 0.69 0.398424
Target:  5'- uGCgGCCGgucaaaaGGGA-GGAGCCCAGgCGUc -3'
miRNA:   3'- gCGgCGGU-------UCCUaCUUCGGGUC-GCAc -5'
19700 5' -58 NC_004686.1 + 13763 0.69 0.390348
Target:  5'- -aCCGCCGAGuGUGAGGCgauCUGGCGUGc -3'
miRNA:   3'- gcGGCGGUUCcUACUUCG---GGUCGCAC- -5'
19700 5' -58 NC_004686.1 + 36322 0.69 0.389457
Target:  5'- gGUCGCCGAGGuUGAGcggcugcGuCCCAGgGUGa -3'
miRNA:   3'- gCGGCGGUUCCuACUU-------C-GGGUCgCAC- -5'
19700 5' -58 NC_004686.1 + 17910 0.7 0.315673
Target:  5'- aGCUGUCGGGGGUGuauGAGCCUgcugagGGUGUGa -3'
miRNA:   3'- gCGGCGGUUCCUAC---UUCGGG------UCGCAC- -5'
19700 5' -58 NC_004686.1 + 35095 0.73 0.205105
Target:  5'- aGCCGaucuCCGAGGGUGAAGCCguucaAGCGgUGg -3'
miRNA:   3'- gCGGC----GGUUCCUACUUCGGg----UCGC-AC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.