miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19701 3' -58 NC_004686.1 + 38850 0.66 0.56156
Target:  5'- gAUCUGcUGGGaauGCCccgugcaGCCGCagUGCCUGCa -3'
miRNA:   3'- -UAGAC-ACCU---UGGag-----CGGUG--ACGGGCG- -5'
19701 3' -58 NC_004686.1 + 24847 0.66 0.550878
Target:  5'- -cCUGUccuGGAugUUCGCCACaggacacCCCGCc -3'
miRNA:   3'- uaGACA---CCUugGAGCGGUGac-----GGGCG- -5'
19701 3' -58 NC_004686.1 + 8465 0.66 0.519237
Target:  5'- ---gGUGGGACUUCcucgaugagGCCAgUGUCCGUg -3'
miRNA:   3'- uagaCACCUUGGAG---------CGGUgACGGGCG- -5'
19701 3' -58 NC_004686.1 + 15639 0.67 0.488338
Target:  5'- uUCcgGUGGAggaACCUgacccggaGCCGaaucCUGCCCGCg -3'
miRNA:   3'- uAGa-CACCU---UGGAg-------CGGU----GACGGGCG- -5'
19701 3' -58 NC_004686.1 + 33839 0.67 0.47823
Target:  5'- ----uUGGAGCCgucacCGCUGCcGCCCGCc -3'
miRNA:   3'- uagacACCUUGGa----GCGGUGaCGGGCG- -5'
19701 3' -58 NC_004686.1 + 37909 0.68 0.448548
Target:  5'- aGUCcG-GGAGgCUCGcCCGCUGCCgUGCu -3'
miRNA:   3'- -UAGaCaCCUUgGAGC-GGUGACGG-GCG- -5'
19701 3' -58 NC_004686.1 + 3747 0.68 0.401449
Target:  5'- -aUUGUGGcACacaauUCGCCAUUucGCCCGCa -3'
miRNA:   3'- uaGACACCuUGg----AGCGGUGA--CGGGCG- -5'
19701 3' -58 NC_004686.1 + 17124 0.69 0.357619
Target:  5'- -aCUaUGGGucCCUUGCCgaguugGCUGCCCGCc -3'
miRNA:   3'- uaGAcACCUu-GGAGCGG------UGACGGGCG- -5'
19701 3' -58 NC_004686.1 + 15453 0.7 0.349265
Target:  5'- uUCUGUGGAugCUgGUgGCgugGCCUGg -3'
miRNA:   3'- uAGACACCUugGAgCGgUGa--CGGGCg -5'
19701 3' -58 NC_004686.1 + 21543 0.72 0.252813
Target:  5'- -gCUGUGGAuguggauGCCaCGCCGUUGCCUGCc -3'
miRNA:   3'- uaGACACCU-------UGGaGCGGUGACGGGCG- -5'
19701 3' -58 NC_004686.1 + 41326 0.75 0.145207
Target:  5'- uUCgGUGGAggaagcccgagACCUCGCCGCUGCUcuucuCGCu -3'
miRNA:   3'- uAGaCACCU-----------UGGAGCGGUGACGG-----GCG- -5'
19701 3' -58 NC_004686.1 + 42275 1.08 0.000531
Target:  5'- gAUCUGUGGAACCUCGCCACUGCCCGCc -3'
miRNA:   3'- -UAGACACCUUGGAGCGGUGACGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.