miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19701 5' -59.5 NC_004686.1 + 43377 0.66 0.49092
Target:  5'- -cGUGGaUGgaGAUaucGCGGaUCCCCGGc -3'
miRNA:   3'- uaCGCCcACgaCUA---CGCCaAGGGGCC- -5'
19701 5' -59.5 NC_004686.1 + 1640 0.66 0.49092
Target:  5'- -gGCGGaUGUUGAUGUGGa--UCCGGa -3'
miRNA:   3'- uaCGCCcACGACUACGCCaagGGGCC- -5'
19701 5' -59.5 NC_004686.1 + 19287 0.66 0.480947
Target:  5'- gGUGCGGGUGgUGAUucgcuCGGUUUgaUCGGg -3'
miRNA:   3'- -UACGCCCACgACUAc----GCCAAGg-GGCC- -5'
19701 5' -59.5 NC_004686.1 + 7214 0.66 0.471074
Target:  5'- -aGUGGGUGacuuCUGGcUGcCGGacgCCCCGGg -3'
miRNA:   3'- uaCGCCCAC----GACU-AC-GCCaa-GGGGCC- -5'
19701 5' -59.5 NC_004686.1 + 8829 0.67 0.423344
Target:  5'- --uCGGGUGUc--UGCGGUUCCgCUGGg -3'
miRNA:   3'- uacGCCCACGacuACGCCAAGG-GGCC- -5'
19701 5' -59.5 NC_004686.1 + 5372 0.67 0.405079
Target:  5'- cUGUGGGU-CUGGUccuCGGUgacaaccugUCCCCGGa -3'
miRNA:   3'- uACGCCCAcGACUAc--GCCA---------AGGGGCC- -5'
19701 5' -59.5 NC_004686.1 + 43686 0.68 0.396134
Target:  5'- -cGuCGGGUGUUGuUGCGGauccgUUCgCCGGu -3'
miRNA:   3'- uaC-GCCCACGACuACGCC-----AAGgGGCC- -5'
19701 5' -59.5 NC_004686.1 + 2971 0.68 0.370078
Target:  5'- gGUGUcGGUGCUGcuGUGCGGUUUUggcugCCGGu -3'
miRNA:   3'- -UACGcCCACGAC--UACGCCAAGG-----GGCC- -5'
19701 5' -59.5 NC_004686.1 + 33734 0.68 0.361656
Target:  5'- -gGCGGG-GCUGAUGaUGGUcucuacgaUCCauCCGGg -3'
miRNA:   3'- uaCGCCCaCGACUAC-GCCA--------AGG--GGCC- -5'
19701 5' -59.5 NC_004686.1 + 21822 0.69 0.340392
Target:  5'- uUGCGGGUGCgccucggcggcgcgGgcGCGGgcggcggCUCCGGa -3'
miRNA:   3'- uACGCCCACGa-------------CuaCGCCaa-----GGGGCC- -5'
19701 5' -59.5 NC_004686.1 + 42616 0.69 0.313973
Target:  5'- uGUGCGGGaGUUGGaGuCGGUUCaggaCCGGg -3'
miRNA:   3'- -UACGCCCaCGACUaC-GCCAAGg---GGCC- -5'
19701 5' -59.5 NC_004686.1 + 42313 1.07 0.000518
Target:  5'- gAUGCGGGUGCUGAUGCGGUUCCCCGGc -3'
miRNA:   3'- -UACGCCCACGACUACGCCAAGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.