miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19702 5' -56.4 NC_004686.1 + 27459 0.68 0.537374
Target:  5'- gCGCCGCGccaAGGACGCUAucuguGCGUGGgCa-- -3'
miRNA:   3'- -GCGGCGC---UUCUGUGGU-----UGCACC-Gcag -5'
19702 5' -56.4 NC_004686.1 + 14942 0.68 0.537374
Target:  5'- aGCCccucuaCGAGGACACCAuacuuGCGggugGaGCGUCa -3'
miRNA:   3'- gCGGc-----GCUUCUGUGGU-----UGCa---C-CGCAG- -5'
19702 5' -56.4 NC_004686.1 + 13224 0.68 0.526874
Target:  5'- aGCC-CGuuGGACGCC-ACGuUGGUGUCu -3'
miRNA:   3'- gCGGcGCu-UCUGUGGuUGC-ACCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 44077 0.68 0.520612
Target:  5'- gGgCGUGGAGAaACCAgcagccguauucggaACGUGGCGUg -3'
miRNA:   3'- gCgGCGCUUCUgUGGU---------------UGCACCGCAg -5'
19702 5' -56.4 NC_004686.1 + 30339 0.69 0.506114
Target:  5'- -aCCGCGAcGAuguCACCGACGUcGGCGa- -3'
miRNA:   3'- gcGGCGCUuCU---GUGGUUGCA-CCGCag -5'
19702 5' -56.4 NC_004686.1 + 16740 0.69 0.46571
Target:  5'- gGCCGCGGAaauGCGCCGAgauCGUGGCc-- -3'
miRNA:   3'- gCGGCGCUUc--UGUGGUU---GCACCGcag -5'
19702 5' -56.4 NC_004686.1 + 2142 0.7 0.436534
Target:  5'- uCGCgGCGAAcaGCGCUggUGUGGCGg- -3'
miRNA:   3'- -GCGgCGCUUc-UGUGGuuGCACCGCag -5'
19702 5' -56.4 NC_004686.1 + 12164 0.7 0.417679
Target:  5'- gGCCGCGggG---CCAGCGgcGGCGUUc -3'
miRNA:   3'- gCGGCGCuuCuguGGUUGCa-CCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 26836 0.7 0.408439
Target:  5'- uGCCGuCGAAG-CACuCGAUGuUGGCGUg -3'
miRNA:   3'- gCGGC-GCUUCuGUG-GUUGC-ACCGCAg -5'
19702 5' -56.4 NC_004686.1 + 43064 0.71 0.390348
Target:  5'- -uCCGUGGAGACGCUAauuuucGCGUacuuGGCGUCc -3'
miRNA:   3'- gcGGCGCUUCUGUGGU------UGCA----CCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 10596 0.71 0.364213
Target:  5'- cCGCCGCGcAGGuCGCCGAUGcuuugGGCGa- -3'
miRNA:   3'- -GCGGCGC-UUCuGUGGUUGCa----CCGCag -5'
19702 5' -56.4 NC_004686.1 + 21175 0.73 0.296207
Target:  5'- gCGCCGCGggGgcugGCACUggUucagcgcagacguuuGUGGUGUCg -3'
miRNA:   3'- -GCGGCGCuuC----UGUGGuuG---------------CACCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 36443 0.73 0.272178
Target:  5'- gGCgGUGAAGGC-CCAugGUGGCaaacGUCu -3'
miRNA:   3'- gCGgCGCUUCUGuGGUugCACCG----CAG- -5'
19702 5' -56.4 NC_004686.1 + 4542 0.74 0.265415
Target:  5'- cCGCUGCGgcGGCACCGACcucuucagGGaCGUCg -3'
miRNA:   3'- -GCGGCGCuuCUGUGGUUGca------CC-GCAG- -5'
19702 5' -56.4 NC_004686.1 + 14090 0.75 0.210558
Target:  5'- -aCCGCGAAGACGgUGACGUGGuCGUg -3'
miRNA:   3'- gcGGCGCUUCUGUgGUUGCACC-GCAg -5'
19702 5' -56.4 NC_004686.1 + 5528 0.76 0.199775
Target:  5'- aCGCgGCGGugucGGACACCGucCGUGGCGg- -3'
miRNA:   3'- -GCGgCGCU----UCUGUGGUu-GCACCGCag -5'
19702 5' -56.4 NC_004686.1 + 37370 0.81 0.090269
Target:  5'- uCGCCGCGAugAGGCAgCAGCGUgaGGUGUCc -3'
miRNA:   3'- -GCGGCGCU--UCUGUgGUUGCA--CCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 42962 1.08 0.000942
Target:  5'- uCGCCGCGAAGACACCAACGUGGCGUCc -3'
miRNA:   3'- -GCGGCGCUUCUGUGGUUGCACCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.