miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19703 3' -57.4 NC_004686.1 + 49961 0.66 0.610706
Target:  5'- -uGCGGGCCgaccggCGCCGUACGGGgagucacUGUGGa -3'
miRNA:   3'- agUGUCUGG------GCGGUAUGCCC-------GCACUa -5'
19703 3' -57.4 NC_004686.1 + 42702 0.66 0.600907
Target:  5'- aUCGuCA-ACCCGCCAUcggUGGGgGUGAUg -3'
miRNA:   3'- -AGU-GUcUGGGCGGUAu--GCCCgCACUA- -5'
19703 3' -57.4 NC_004686.1 + 4702 0.66 0.600907
Target:  5'- cUCGCAGACCgCGCCGcggaGCaGGCGa--- -3'
miRNA:   3'- -AGUGUCUGG-GCGGUa---UGcCCGCacua -5'
19703 3' -57.4 NC_004686.1 + 16987 0.66 0.590045
Target:  5'- cUCACGGGCCUgGCCGccgGCGGGuCGg--- -3'
miRNA:   3'- -AGUGUCUGGG-CGGUa--UGCCC-GCacua -5'
19703 3' -57.4 NC_004686.1 + 39156 0.66 0.561985
Target:  5'- gCGCAGACCUGCUcgaaugagugccgACGGGCGcaGAg -3'
miRNA:   3'- aGUGUCUGGGCGGua-----------UGCCCGCa-CUa -5'
19703 3' -57.4 NC_004686.1 + 15323 0.67 0.525877
Target:  5'- uUUGCAgGACCCuGCCcagaGGGCGUGGg -3'
miRNA:   3'- -AGUGU-CUGGG-CGGuaugCCCGCACUa -5'
19703 3' -57.4 NC_004686.1 + 27489 0.68 0.484578
Target:  5'- -gGCAaucGACCCGCCcgAUGCGGGUacgaGUGGc -3'
miRNA:   3'- agUGU---CUGGGCGG--UAUGCCCG----CACUa -5'
19703 3' -57.4 NC_004686.1 + 39315 0.68 0.464516
Target:  5'- -uGCAGcguGCCCGCgCGaagACGGGUGUGGc -3'
miRNA:   3'- agUGUC---UGGGCG-GUa--UGCCCGCACUa -5'
19703 3' -57.4 NC_004686.1 + 42291 0.68 0.43526
Target:  5'- cCACu-GCCCGCCAcaaggaacugaUGCGGGUGcUGAUg -3'
miRNA:   3'- aGUGucUGGGCGGU-----------AUGCCCGC-ACUA- -5'
19703 3' -57.4 NC_004686.1 + 16180 0.69 0.425747
Target:  5'- cCGCAGAUCCGCUuUGCGGGUu---- -3'
miRNA:   3'- aGUGUCUGGGCGGuAUGCCCGcacua -5'
19703 3' -57.4 NC_004686.1 + 50838 0.7 0.366209
Target:  5'- aC-CAGACCCacagcagccucaacaGCCAgguCGGGCGUGGc -3'
miRNA:   3'- aGuGUCUGGG---------------CGGUau-GCCCGCACUa -5'
19703 3' -57.4 NC_004686.1 + 43967 0.81 0.067146
Target:  5'- gUCACAGACCCGCCAUAC-GGCaUGGc -3'
miRNA:   3'- -AGUGUCUGGGCGGUAUGcCCGcACUa -5'
19703 3' -57.4 NC_004686.1 + 43262 1.05 0.001059
Target:  5'- gUCACAGACCCGCCAUACGGGCGUGAUu -3'
miRNA:   3'- -AGUGUCUGGGCGGUAUGCCCGCACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.