Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19703 | 3' | -57.4 | NC_004686.1 | + | 43262 | 1.05 | 0.001059 |
Target: 5'- gUCACAGACCCGCCAUACGGGCGUGAUu -3' miRNA: 3'- -AGUGUCUGGGCGGUAUGCCCGCACUA- -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 43967 | 0.81 | 0.067146 |
Target: 5'- gUCACAGACCCGCCAUAC-GGCaUGGc -3' miRNA: 3'- -AGUGUCUGGGCGGUAUGcCCGcACUa -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 50838 | 0.7 | 0.366209 |
Target: 5'- aC-CAGACCCacagcagccucaacaGCCAgguCGGGCGUGGc -3' miRNA: 3'- aGuGUCUGGG---------------CGGUau-GCCCGCACUa -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 16180 | 0.69 | 0.425747 |
Target: 5'- cCGCAGAUCCGCUuUGCGGGUu---- -3' miRNA: 3'- aGUGUCUGGGCGGuAUGCCCGcacua -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 42291 | 0.68 | 0.43526 |
Target: 5'- cCACu-GCCCGCCAcaaggaacugaUGCGGGUGcUGAUg -3' miRNA: 3'- aGUGucUGGGCGGU-----------AUGCCCGC-ACUA- -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 39315 | 0.68 | 0.464516 |
Target: 5'- -uGCAGcguGCCCGCgCGaagACGGGUGUGGc -3' miRNA: 3'- agUGUC---UGGGCG-GUa--UGCCCGCACUa -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 27489 | 0.68 | 0.484578 |
Target: 5'- -gGCAaucGACCCGCCcgAUGCGGGUacgaGUGGc -3' miRNA: 3'- agUGU---CUGGGCGG--UAUGCCCG----CACUa -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 15323 | 0.67 | 0.525877 |
Target: 5'- uUUGCAgGACCCuGCCcagaGGGCGUGGg -3' miRNA: 3'- -AGUGU-CUGGG-CGGuaugCCCGCACUa -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 49961 | 0.66 | 0.610706 |
Target: 5'- -uGCGGGCCgaccggCGCCGUACGGGgagucacUGUGGa -3' miRNA: 3'- agUGUCUGG------GCGGUAUGCCC-------GCACUa -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 4702 | 0.66 | 0.600907 |
Target: 5'- cUCGCAGACCgCGCCGcggaGCaGGCGa--- -3' miRNA: 3'- -AGUGUCUGG-GCGGUa---UGcCCGCacua -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 16987 | 0.66 | 0.590045 |
Target: 5'- cUCACGGGCCUgGCCGccgGCGGGuCGg--- -3' miRNA: 3'- -AGUGUCUGGG-CGGUa--UGCCC-GCacua -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 39156 | 0.66 | 0.561985 |
Target: 5'- gCGCAGACCUGCUcgaaugagugccgACGGGCGcaGAg -3' miRNA: 3'- aGUGUCUGGGCGGua-----------UGCCCGCa-CUa -5' |
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19703 | 3' | -57.4 | NC_004686.1 | + | 42702 | 0.66 | 0.600907 |
Target: 5'- aUCGuCA-ACCCGCCAUcggUGGGgGUGAUg -3' miRNA: 3'- -AGU-GUcUGGGCGGUAu--GCCCgCACUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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