miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19703 5' -54.8 NC_004686.1 + 2646 0.66 0.763176
Target:  5'- aGCGgUUCgcGCUGCCGGCcGGUUUGGu- -3'
miRNA:   3'- -CGUgAAG--UGGCGGUUGuCCAGACCcu -5'
19703 5' -54.8 NC_004686.1 + 1942 0.66 0.763176
Target:  5'- uGCGCauccagcCACUGCCggUAGGcgUUGGGGc -3'
miRNA:   3'- -CGUGaa-----GUGGCGGuuGUCCa-GACCCU- -5'
19703 5' -54.8 NC_004686.1 + 17079 0.66 0.763176
Target:  5'- -aACUcgcCACCGCaguggcuGCAGGUCUuucGGGAa -3'
miRNA:   3'- cgUGAa--GUGGCGgu-----UGUCCAGA---CCCU- -5'
19703 5' -54.8 NC_004686.1 + 36139 0.67 0.688805
Target:  5'- uGCGCUggaaggCGuuGCCuACGGGcCgUGGGAg -3'
miRNA:   3'- -CGUGAa-----GUggCGGuUGUCCaG-ACCCU- -5'
19703 5' -54.8 NC_004686.1 + 2118 0.67 0.677869
Target:  5'- cCGC-UCGCCGCCc----GUCUGGGAa -3'
miRNA:   3'- cGUGaAGUGGCGGuugucCAGACCCU- -5'
19703 5' -54.8 NC_004686.1 + 47185 0.67 0.676773
Target:  5'- aGCAaccUCACCGCCGGCgaagcgaAGGUCcucggaUGGGc -3'
miRNA:   3'- -CGUga-AGUGGCGGUUG-------UCCAG------ACCCu -5'
19703 5' -54.8 NC_004686.1 + 27357 0.67 0.655879
Target:  5'- cCACUUCGCCGCCAACccGUaaucaaUGGu- -3'
miRNA:   3'- cGUGAAGUGGCGGUUGucCAg-----ACCcu -5'
19703 5' -54.8 NC_004686.1 + 50078 0.68 0.644845
Target:  5'- -aGCUUCGCCuccGCCAACuGGUCgucagaaGGGu -3'
miRNA:   3'- cgUGAAGUGG---CGGUUGuCCAGa------CCCu -5'
19703 5' -54.8 NC_004686.1 + 55 0.68 0.632694
Target:  5'- cGCcCgUUCgACCGCCGcguuuccGCAGGUCaGGGGc -3'
miRNA:   3'- -CGuG-AAG-UGGCGGU-------UGUCCAGaCCCU- -5'
19703 5' -54.8 NC_004686.1 + 34400 0.69 0.578741
Target:  5'- aGUGCgUCG-CGCCGACAGGggUUGGGGc -3'
miRNA:   3'- -CGUGaAGUgGCGGUUGUCCa-GACCCU- -5'
19703 5' -54.8 NC_004686.1 + 16991 0.69 0.535434
Target:  5'- cGgGCcUgGCCGCCGGCGGGUCggcguaaucaUGGGu -3'
miRNA:   3'- -CgUGaAgUGGCGGUUGUCCAG----------ACCCu -5'
19703 5' -54.8 NC_004686.1 + 21777 0.69 0.532228
Target:  5'- uCACUUCACCGCgAagcaaacguccuagAUAGGaaUGGGAa -3'
miRNA:   3'- cGUGAAGUGGCGgU--------------UGUCCagACCCU- -5'
19703 5' -54.8 NC_004686.1 + 13295 0.75 0.2608
Target:  5'- cGCACgugUCgACCGCCAuauucacugagGCGGG-CUGGGGu -3'
miRNA:   3'- -CGUGa--AG-UGGCGGU-----------UGUCCaGACCCU- -5'
19703 5' -54.8 NC_004686.1 + 43311 1.11 0.000865
Target:  5'- gGCACUUCACCGCCAACAGGUCUGGGAu -3'
miRNA:   3'- -CGUGAAGUGGCGGUUGUCCAGACCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.