miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19704 3' -54.5 NC_004686.1 + 4921 0.66 0.729604
Target:  5'- cAGcGGUc-CCAuCCcGCGCCGCAGUGAc -3'
miRNA:   3'- -UCaCUAucGGU-GGuCGCGGCGUUACU- -5'
19704 3' -54.5 NC_004686.1 + 22718 0.66 0.729604
Target:  5'- cGGUGGUcacucAGCuCACCcgccuaacccccGGCGCCGCGGc-- -3'
miRNA:   3'- -UCACUA-----UCG-GUGG------------UCGCGGCGUUacu -5'
19704 3' -54.5 NC_004686.1 + 7188 0.66 0.718789
Target:  5'- cAGUGGU-GCCuuCCAGUGCUGCu---- -3'
miRNA:   3'- -UCACUAuCGGu-GGUCGCGGCGuuacu -5'
19704 3' -54.5 NC_004686.1 + 42510 0.66 0.707885
Target:  5'- -----gGGCgggACCAGCGCCGCGGcUGAa -3'
miRNA:   3'- ucacuaUCGg--UGGUCGCGGCGUU-ACU- -5'
19704 3' -54.5 NC_004686.1 + 50290 0.66 0.696904
Target:  5'- --cGAUAGCCACCGGCcagaCGCGc--- -3'
miRNA:   3'- ucaCUAUCGGUGGUCGcg--GCGUuacu -5'
19704 3' -54.5 NC_004686.1 + 38868 0.67 0.674758
Target:  5'- cGUGc-AGCCG-CAGUGCCuGCAGUGGg -3'
miRNA:   3'- uCACuaUCGGUgGUCGCGG-CGUUACU- -5'
19704 3' -54.5 NC_004686.1 + 37723 0.67 0.674758
Target:  5'- aGGUGAUGGCC---AGCGUCGCGu--- -3'
miRNA:   3'- -UCACUAUCGGuggUCGCGGCGUuacu -5'
19704 3' -54.5 NC_004686.1 + 33580 0.67 0.663618
Target:  5'- cGGUGAUGGCgAUCuGC-CCgGCGGUGGg -3'
miRNA:   3'- -UCACUAUCGgUGGuCGcGG-CGUUACU- -5'
19704 3' -54.5 NC_004686.1 + 39635 0.68 0.607673
Target:  5'- uGGUGAUGcGCCGCCGGUG--GUGGUGAg -3'
miRNA:   3'- -UCACUAU-CGGUGGUCGCggCGUUACU- -5'
19704 3' -54.5 NC_004686.1 + 43857 0.68 0.596509
Target:  5'- cGUcGUGGCCGCCGGCauaGCCGCc---- -3'
miRNA:   3'- uCAcUAUCGGUGGUCG---CGGCGuuacu -5'
19704 3' -54.5 NC_004686.1 + 52270 0.69 0.552258
Target:  5'- cAGUGA-GGCaGCCAGCGuuGCAGa-- -3'
miRNA:   3'- -UCACUaUCGgUGGUCGCggCGUUacu -5'
19704 3' -54.5 NC_004686.1 + 31748 0.69 0.552258
Target:  5'- -aUGGUGGCgGCCGcCGCCGCAGc-- -3'
miRNA:   3'- ucACUAUCGgUGGUcGCGGCGUUacu -5'
19704 3' -54.5 NC_004686.1 + 27866 0.69 0.518653
Target:  5'- cGGUGAUGGauaC-CCAGCacgagccaaccccGCUGCAGUGAa -3'
miRNA:   3'- -UCACUAUCg--GuGGUCG-------------CGGCGUUACU- -5'
19704 3' -54.5 NC_004686.1 + 12713 0.7 0.49846
Target:  5'- --cGAUAcCCACCgacAGCGCCGCGAaGAc -3'
miRNA:   3'- ucaCUAUcGGUGG---UCGCGGCGUUaCU- -5'
19704 3' -54.5 NC_004686.1 + 33809 0.71 0.447128
Target:  5'- cGGUuGUAGCCAUCGGUGCCGguGc-- -3'
miRNA:   3'- -UCAcUAUCGGUGGUCGCGGCguUacu -5'
19704 3' -54.5 NC_004686.1 + 33427 0.73 0.312957
Target:  5'- uGGUGAUGGugggcugaCCACCGGUGaCCGCGAUa- -3'
miRNA:   3'- -UCACUAUC--------GGUGGUCGC-GGCGUUAcu -5'
19704 3' -54.5 NC_004686.1 + 46400 0.75 0.241821
Target:  5'- cAGUGGggacGCCGgCGGCGaCCGCAGUGGc -3'
miRNA:   3'- -UCACUau--CGGUgGUCGC-GGCGUUACU- -5'
19704 3' -54.5 NC_004686.1 + 49960 0.76 0.22932
Target:  5'- -aUGcgGGCCgACCGGCGCCGUAcgGGg -3'
miRNA:   3'- ucACuaUCGG-UGGUCGCGGCGUuaCU- -5'
19704 3' -54.5 NC_004686.1 + 43575 1.09 0.001053
Target:  5'- cAGUGAUAGCCACCAGCGCCGCAAUGAu -3'
miRNA:   3'- -UCACUAUCGGUGGUCGCGGCGUUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.