miRNA display CGI

Results 1 - 10 of 10 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
19705	3'	-55.4	NC_004686.1	+	69	0.66	0.728785
	Target:  5'- -aUCCGGgaucgUCGGCGggcugaGGuUCGcCGGCGu -3' miRNA:   3'- caAGGCCa----AGCUGCaa----CC-AGC-GCCGU- -5'
19705	3'	-55.4	NC_004686.1	+	21878	0.67	0.681789
	Target:  5'- -cUCCGGguaucgcuacggCGGCGgcGGUgGCGGUg -3' miRNA:   3'- caAGGCCaa----------GCUGCaaCCAgCGCCGu -5'
19705	3'	-55.4	NC_004686.1	+	26533	0.67	0.664426
	Target:  5'- -aUCCGGggaaccUCGACaugucgUGGUucCGCGGCGa -3' miRNA:   3'- caAGGCCa-----AGCUGca----ACCA--GCGCCGU- -5'
19705	3'	-55.4	NC_004686.1	+	1958	0.68	0.6317
	Target:  5'- --gCCGGUa-GGCGUUGGggcuguguucCGCGGCGu -3' miRNA:   3'- caaGGCCAagCUGCAACCa---------GCGCCGU- -5'
19705	3'	-55.4	NC_004686.1	+	21473	0.69	0.534491
	Target:  5'- -gUCUGGUgauguuUCGGCGUU-GUCGgGGCGg -3' miRNA:   3'- caAGGCCA------AGCUGCAAcCAGCgCCGU- -5'
19705	3'	-55.4	NC_004686.1	+	12441	0.7	0.472627
	Target:  5'- -cUUCGaGUUCGACGccgaUGG-CGCGGCGg -3' miRNA:   3'- caAGGC-CAAGCUGCa---ACCaGCGCCGU- -5'
19705	3'	-55.4	NC_004686.1	+	25142	0.71	0.443071
	Target:  5'- ---aCGGagaagaUUCGGCGUgcugUGGUCGCGGCc -3' miRNA:   3'- caagGCC------AAGCUGCA----ACCAGCGCCGu -5'
19705	3'	-55.4	NC_004686.1	+	23036	0.72	0.387253
	Target:  5'- aUUCCGGUUugugUGGCGUUGGUggcuagcccCGgCGGCAu -3' miRNA:   3'- cAAGGCCAA----GCUGCAACCA---------GC-GCCGU- -5'
19705	3'	-55.4	NC_004686.1	+	44399	0.9	0.026334
	Target:  5'- gGUUCCGGaUCcACGUUGGUCGCGGCAc -3' miRNA:   3'- -CAAGGCCaAGcUGCAACCAGCGCCGU- -5'
19705	3'	-55.4	NC_004686.1	+	43715	1.08	0.001329
	Target:  5'- gGUUCCGGUUCGACGUUGGUCGCGGCAc -3' miRNA:   3'- -CAAGGCCAAGCUGCAACCAGCGCCGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home