miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19706 5' -50.3 NC_004686.1 + 42942 0.66 0.951763
Target:  5'- cCCCGg-GCucucGGCGgcucucgccGCGAAGACACCAa -3'
miRNA:   3'- uGGGCagCGu---UUGC---------UGCUUUUGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 56048 0.66 0.951763
Target:  5'- gGCCgCGUCGCc--UGGCGGuucGGCACCc -3'
miRNA:   3'- -UGG-GCAGCGuuuGCUGCUu--UUGUGGu -5'
19706 5' -50.3 NC_004686.1 + 19785 0.66 0.951763
Target:  5'- aACCUucUGCGGugGugGAGGuCGCCAc -3'
miRNA:   3'- -UGGGcaGCGUUugCugCUUUuGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 40599 0.66 0.951763
Target:  5'- uGCCCGUUGgGAcaccgguuGCGACGc---CGCCAc -3'
miRNA:   3'- -UGGGCAGCgUU--------UGCUGCuuuuGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 18953 0.66 0.951763
Target:  5'- uCCCGgcgCGgGAGCGGgGGAAccaugcccGCGCCGg -3'
miRNA:   3'- uGGGCa--GCgUUUGCUgCUUU--------UGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 4373 0.66 0.947117
Target:  5'- cGCCCGcCGCGAACGAguucaaGgcAAuCACCu -3'
miRNA:   3'- -UGGGCaGCGUUUGCUg-----CuuUU-GUGGu -5'
19706 5' -50.3 NC_004686.1 + 1600 0.66 0.942185
Target:  5'- uACagGUCGCAGuCGAUGu--GCACCAa -3'
miRNA:   3'- -UGggCAGCGUUuGCUGCuuuUGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 36452 0.66 0.936963
Target:  5'- gGCCCaugGUgGCAAACGucuuCGGAGACuCCu -3'
miRNA:   3'- -UGGG---CAgCGUUUGCu---GCUUUUGuGGu -5'
19706 5' -50.3 NC_004686.1 + 55381 0.66 0.936963
Target:  5'- cACCUGUC-CGGugGAgGAGGcgcACACCu -3'
miRNA:   3'- -UGGGCAGcGUUugCUgCUUU---UGUGGu -5'
19706 5' -50.3 NC_004686.1 + 46825 0.66 0.93145
Target:  5'- uGCCCGaucuUCuGCccgGAACGGCG-GGACGCCGa -3'
miRNA:   3'- -UGGGC----AG-CG---UUUGCUGCuUUUGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 42416 0.66 0.93145
Target:  5'- uUCUG-CGCGAGCGugGc--ACGCCAg -3'
miRNA:   3'- uGGGCaGCGUUUGCugCuuuUGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 5260 0.66 0.93145
Target:  5'- uGCUCGUCGCGG--GGCuGGAAACACg- -3'
miRNA:   3'- -UGGGCAGCGUUugCUG-CUUUUGUGgu -5'
19706 5' -50.3 NC_004686.1 + 23209 0.66 0.930883
Target:  5'- uCCUGUCGuCAGGCG-CGGGAggugcggcaacagGCACCu -3'
miRNA:   3'- uGGGCAGC-GUUUGCuGCUUU-------------UGUGGu -5'
19706 5' -50.3 NC_004686.1 + 40112 0.67 0.919545
Target:  5'- gGCCUGUC-CGAGCGu---GAACGCCGa -3'
miRNA:   3'- -UGGGCAGcGUUUGCugcuUUUGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 49645 0.67 0.919545
Target:  5'- aACCUGg-GCAuGCGGCGAGGAagACCGa -3'
miRNA:   3'- -UGGGCagCGUuUGCUGCUUUUg-UGGU- -5'
19706 5' -50.3 NC_004686.1 + 14160 0.67 0.919545
Target:  5'- -gCCGUCGUGuuCGAUGAcuucguagcGGGCACCu -3'
miRNA:   3'- ugGGCAGCGUuuGCUGCU---------UUUGUGGu -5'
19706 5' -50.3 NC_004686.1 + 38511 0.67 0.913154
Target:  5'- cACCggaGUCGacAACGACcGAGACGCCAu -3'
miRNA:   3'- -UGGg--CAGCguUUGCUGcUUUUGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 49554 0.67 0.913154
Target:  5'- cCCCGUCGaGAAUucCGGcgGCACCAg -3'
miRNA:   3'- uGGGCAGCgUUUGcuGCUuuUGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 39775 0.67 0.906472
Target:  5'- cCCCGUcCGUGAugGGCGggGcUAUCGg -3'
miRNA:   3'- uGGGCA-GCGUUugCUGCuuUuGUGGU- -5'
19706 5' -50.3 NC_004686.1 + 8253 0.67 0.906472
Target:  5'- uUCCGUCGCGc-CGGCGAGccaACCGa -3'
miRNA:   3'- uGGGCAGCGUuuGCUGCUUuugUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.