miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19709 3' -50.5 NC_004686.1 + 47057 0.66 0.935322
Target:  5'- uCAC-CcgCGAGGGACAgCcgGACGc- -3'
miRNA:   3'- -GUGuGuaGCUCCUUGUgGuaCUGCac -5'
19709 3' -50.5 NC_004686.1 + 29312 0.66 0.923808
Target:  5'- uCACuguCGUCGAGGGuAUugCGggcaGGCGUGa -3'
miRNA:   3'- -GUGu--GUAGCUCCU-UGugGUa---CUGCAC- -5'
19709 3' -50.5 NC_004686.1 + 36791 0.66 0.91761
Target:  5'- aACugAU-GAGGAguacGCGCCGUgggaGACGUGg -3'
miRNA:   3'- gUGugUAgCUCCU----UGUGGUA----CUGCAC- -5'
19709 3' -50.5 NC_004686.1 + 23863 0.67 0.904338
Target:  5'- cCGgGCGUUGAaGGACGCCGUGGC-UGa -3'
miRNA:   3'- -GUgUGUAGCUcCUUGUGGUACUGcAC- -5'
19709 3' -50.5 NC_004686.1 + 22040 0.67 0.904338
Target:  5'- gGCGCGUCGAcauuCACCucggGUGGCGUGu -3'
miRNA:   3'- gUGUGUAGCUccuuGUGG----UACUGCAC- -5'
19709 3' -50.5 NC_004686.1 + 28750 0.67 0.904338
Target:  5'- aACGC-UUGGGGGGCGCgGUGAUGc- -3'
miRNA:   3'- gUGUGuAGCUCCUUGUGgUACUGCac -5'
19709 3' -50.5 NC_004686.1 + 7895 0.67 0.897269
Target:  5'- cUACGCAggacaacuaCGAGGAG-ACCGUGGCGg- -3'
miRNA:   3'- -GUGUGUa--------GCUCCUUgUGGUACUGCac -5'
19709 3' -50.5 NC_004686.1 + 1916 0.68 0.849098
Target:  5'- gGCugGUgCGGGGAACGCguUGugGcUGa -3'
miRNA:   3'- gUGugUA-GCUCCUUGUGguACugC-AC- -5'
19709 3' -50.5 NC_004686.1 + 35826 0.69 0.821643
Target:  5'- aACACGaUGAGGGagACGCgAUGACGUu -3'
miRNA:   3'- gUGUGUaGCUCCU--UGUGgUACUGCAc -5'
19709 3' -50.5 NC_004686.1 + 39924 0.69 0.812053
Target:  5'- -uCGCcccuGUUGAGGAcaaGCACgCGUGGCGUGa -3'
miRNA:   3'- guGUG----UAGCUCCU---UGUG-GUACUGCAC- -5'
19709 3' -50.5 NC_004686.1 + 19124 0.69 0.812053
Target:  5'- gACuuuCAUCGAGGGugaacauuucgACGCCGaugagGACGUGa -3'
miRNA:   3'- gUGu--GUAGCUCCU-----------UGUGGUa----CUGCAC- -5'
19709 3' -50.5 NC_004686.1 + 11924 0.69 0.802263
Target:  5'- -uCGC-UCGGGGAugACUcgGugGUGa -3'
miRNA:   3'- guGUGuAGCUCCUugUGGuaCugCAC- -5'
19709 3' -50.5 NC_004686.1 + 17331 0.7 0.782127
Target:  5'- aCAC-CGUCGAGGAuGCGCUAggGGCGcUGg -3'
miRNA:   3'- -GUGuGUAGCUCCU-UGUGGUa-CUGC-AC- -5'
19709 3' -50.5 NC_004686.1 + 17881 0.7 0.771804
Target:  5'- gCGgACAcCGAGGAACgcugcgaugaaaGCCAUGACGa- -3'
miRNA:   3'- -GUgUGUaGCUCCUUG------------UGGUACUGCac -5'
19709 3' -50.5 NC_004686.1 + 54601 0.7 0.771804
Target:  5'- uGCACAUCGAcuGcGAccuguacgacaGCACCAUGAcCGUGc -3'
miRNA:   3'- gUGUGUAGCU--C-CU-----------UGUGGUACU-GCAC- -5'
19709 3' -50.5 NC_004686.1 + 37734 0.71 0.729107
Target:  5'- gGgGCGUCGuGGAGCGCCAUugaaGGCGa- -3'
miRNA:   3'- gUgUGUAGCuCCUUGUGGUA----CUGCac -5'
19709 3' -50.5 NC_004686.1 + 28427 0.74 0.538391
Target:  5'- gUugGCggCGAGGAACAUgAUGGCGUc -3'
miRNA:   3'- -GugUGuaGCUCCUUGUGgUACUGCAc -5'
19709 3' -50.5 NC_004686.1 + 25571 0.79 0.308362
Target:  5'- gCGCGCGuUCGGGGGGCGCUgauGUGugGUGg -3'
miRNA:   3'- -GUGUGU-AGCUCCUUGUGG---UACugCAC- -5'
19709 3' -50.5 NC_004686.1 + 45836 1.08 0.003948
Target:  5'- gCACACAUCGAGGAACACCAUGACGUGc -3'
miRNA:   3'- -GUGUGUAGCUCCUUGUGGUACUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.