Results 21 - 40 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 51266 | 0.67 | 0.592293 |
Target: 5'- cCCUGagcCUUCugCCACACGCCgggcaCCAgGUGCu -3' miRNA: 3'- -GGGC---GAGGugGGUGUGUGG-----GGU-UACG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 37010 | 0.67 | 0.592293 |
Target: 5'- aCCCGUaCCACCagcacccgGCGCACCCgGAa-- -3' miRNA: 3'- -GGGCGaGGUGGg-------UGUGUGGGgUUacg -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 33437 | 0.67 | 0.592293 |
Target: 5'- gCCGCguucgacuaCAuCCCAgACgGCCCCAcgGCa -3' miRNA: 3'- gGGCGag-------GU-GGGUgUG-UGGGGUuaCG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 55878 | 0.67 | 0.592293 |
Target: 5'- gUCGCcaUCCAaccaaCCACAUACCCgAcAUGCu -3' miRNA: 3'- gGGCG--AGGUg----GGUGUGUGGGgU-UACG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 29273 | 0.67 | 0.592293 |
Target: 5'- aCCCGCUUCACCUcCGC-CgUCAAcGCc -3' miRNA: 3'- -GGGCGAGGUGGGuGUGuGgGGUUaCG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 29740 | 0.67 | 0.581593 |
Target: 5'- aUCGCaUgUAUCCGCGCACCCaaccacGUGCg -3' miRNA: 3'- gGGCG-AgGUGGGUGUGUGGGgu----UACG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 7121 | 0.67 | 0.570934 |
Target: 5'- uCgCGCUCUcCCuCGCugACCaCCAggGCg -3' miRNA: 3'- -GgGCGAGGuGG-GUGugUGG-GGUuaCG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 49733 | 0.67 | 0.56987 |
Target: 5'- aCCGCUgagagCCGgCCACGCggguuauggcgauGCCCCGAUccaGCu -3' miRNA: 3'- gGGCGA-----GGUgGGUGUG-------------UGGGGUUA---CG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 38439 | 0.67 | 0.549766 |
Target: 5'- aCUCGC-CgCACCC-CACGCCCag--GCg -3' miRNA: 3'- -GGGCGaG-GUGGGuGUGUGGGguuaCG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 14380 | 0.67 | 0.549766 |
Target: 5'- uCUC-CUUCaACCCGgACACCCCGAgaGCa -3' miRNA: 3'- -GGGcGAGG-UGGGUgUGUGGGGUUa-CG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 21258 | 0.67 | 0.549766 |
Target: 5'- uCCCGa-CCGCCuCACACACaUCCuugGCa -3' miRNA: 3'- -GGGCgaGGUGG-GUGUGUG-GGGuuaCG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 55807 | 0.67 | 0.549766 |
Target: 5'- aCCGCaucgaagCCACCauCAC-CACCCCcgcAUGCu -3' miRNA: 3'- gGGCGa------GGUGG--GUGuGUGGGGu--UACG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 8551 | 0.67 | 0.539272 |
Target: 5'- gCCGCacaaaCACCCGCG-GCUCCGGUGUc -3' miRNA: 3'- gGGCGag---GUGGGUGUgUGGGGUUACG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 10896 | 0.67 | 0.539272 |
Target: 5'- cCCCgGCgggguacacgCCGCCCACAacaACUCCGG-GCa -3' miRNA: 3'- -GGG-CGa---------GGUGGGUGUg--UGGGGUUaCG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 43734 | 0.67 | 0.538226 |
Target: 5'- cCCCGgUCCcggcgguGCCC-CAUugCCCuGAUGUg -3' miRNA: 3'- -GGGCgAGG-------UGGGuGUGugGGG-UUACG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 52487 | 0.67 | 0.537181 |
Target: 5'- uUCGCUCCACgucuCCAacacaucgggaaACACCCCAAacaagGCg -3' miRNA: 3'- gGGCGAGGUG----GGUg-----------UGUGGGGUUa----CG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 14491 | 0.68 | 0.518497 |
Target: 5'- aCCCGCUaCCugCCAgGCgAUCCgGAgccgugGCg -3' miRNA: 3'- -GGGCGA-GGugGGUgUG-UGGGgUUa-----CG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 19631 | 0.68 | 0.518497 |
Target: 5'- aCCCGa--CAguugaCACACACUCCGAUGCu -3' miRNA: 3'- -GGGCgagGUgg---GUGUGUGGGGUUACG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 32048 | 0.68 | 0.508228 |
Target: 5'- aCCGCUuucccacagCCAUgCGCACGCUUCAAcUGCu -3' miRNA: 3'- gGGCGA---------GGUGgGUGUGUGGGGUU-ACG- -5' |
|||||||
19709 | 5' | -57.3 | NC_004686.1 | + | 12824 | 0.68 | 0.505164 |
Target: 5'- aUCCGCgauaucUCCAUCCACgggcagaacgaugaACACCUCugcGUGCa -3' miRNA: 3'- -GGGCG------AGGUGGGUG--------------UGUGGGGu--UACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home