Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19711 | 5' | -58.2 | NC_004686.1 | + | 43632 | 0.66 | 0.568777 |
|
Target: 5'- cUGGucACCCUCAUGAGAaa--CCCCUu -3' miRNA: 3'- -ACCucUGGGAGUGCUCUcagaGGGGG- -5' |
|||||||
| 19711 | 5' | -58.2 | NC_004686.1 | + | 30984 | 0.66 | 0.568777 |
|
Target: 5'- gUGGAagcagGGCCUUCACGcGGGUUUCCaCUg -3' miRNA: 3'- -ACCU-----CUGGGAGUGCuCUCAGAGG-GGg -5' |
|||||||
| 19711 | 5' | -58.2 | NC_004686.1 | + | 30030 | 0.66 | 0.557199 |
|
Target: 5'- cGGAucGACUgcgcugaUUCACGGGAGUCUCCg-- -3' miRNA: 3'- aCCU--CUGG-------GAGUGCUCUCAGAGGggg -5' |
|||||||
| 19711 | 5' | -58.2 | NC_004686.1 | + | 20345 | 0.69 | 0.432354 |
|
Target: 5'- aUGGAcGGCCgCggGCGAGAaugaaacgucaucgcGUCUCCCUCa -3' miRNA: 3'- -ACCU-CUGG-GagUGCUCU---------------CAGAGGGGG- -5' |
|||||||
| 19711 | 5' | -58.2 | NC_004686.1 | + | 43701 | 0.7 | 0.341907 |
|
Target: 5'- aGGuGGCCCUgcgggaagUGCGGGGGUaggcgCCCCCg -3' miRNA: 3'- aCCuCUGGGA--------GUGCUCUCAga---GGGGG- -5' |
|||||||
| 19711 | 5' | -58.2 | NC_004686.1 | + | 42810 | 0.76 | 0.146825 |
|
Target: 5'- aGGcGGACgCCUCAUGAGucgccgguucacggGGUUUCCCCCg -3' miRNA: 3'- aCC-UCUG-GGAGUGCUC--------------UCAGAGGGGG- -5' |
|||||||
| 19711 | 5' | -58.2 | NC_004686.1 | + | 9437 | 0.78 | 0.101105 |
|
Target: 5'- gGGAGACUCUCGUGAGGGUCUCCa-- -3' miRNA: 3'- aCCUCUGGGAGUGCUCUCAGAGGggg -5' |
|||||||
| 19711 | 5' | -58.2 | NC_004686.1 | + | 46761 | 1.12 | 0.000366 |
|
Target: 5'- cUGGAGACCCUCACGAGAGUCUCCCCCa -3' miRNA: 3'- -ACCUCUGGGAGUGCUCUCAGAGGGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home