miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19712 3' -56.8 NC_004686.1 + 55926 0.67 0.604931
Target:  5'- ----cCCGCAcauCCaucGACCGCGCCAUCa -3'
miRNA:   3'- ccaaaGGCGUc--GGc--UUGGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 6321 0.69 0.460113
Target:  5'- ---aUUCGCGGUCGAcACCGUGgCCugCg -3'
miRNA:   3'- ccaaAGGCGUCGGCU-UGGCGC-GGugG- -5'
19712 3' -56.8 NC_004686.1 + 43728 0.69 0.460113
Target:  5'- cGUUggUCGCGGCaCGcAACCuGgGCCGCCg -3'
miRNA:   3'- cCAAa-GGCGUCG-GC-UUGG-CgCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 47283 0.69 0.469911
Target:  5'- ----aUCGCGGCCaaugcucuugcGAAgUGCGCCGCCu -3'
miRNA:   3'- ccaaaGGCGUCGG-----------CUUgGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 7088 0.69 0.478818
Target:  5'- gGGUUUgCGguGUCGAGCCgGCagggugcacggcgGCCACa -3'
miRNA:   3'- -CCAAAgGCguCGGCUUGG-CG-------------CGGUGg -5'
19712 3' -56.8 NC_004686.1 + 51664 0.69 0.479813
Target:  5'- cGGUgccgCCGCAGCgGAAUgGCuugaaCACCg -3'
miRNA:   3'- -CCAaa--GGCGUCGgCUUGgCGcg---GUGG- -5'
19712 3' -56.8 NC_004686.1 + 26178 0.69 0.489817
Target:  5'- -----gCGCAGUCGAuCCGCaacgGCCGCCc -3'
miRNA:   3'- ccaaagGCGUCGGCUuGGCG----CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 54848 0.69 0.510107
Target:  5'- cGUgaCCGCGGUaagGAcCCGCGCCgGCCc -3'
miRNA:   3'- cCAaaGGCGUCGg--CUuGGCGCGG-UGG- -5'
19712 3' -56.8 NC_004686.1 + 22749 0.67 0.583503
Target:  5'- cGGcg-CCGCGGCU--AUCGCgGUCACCg -3'
miRNA:   3'- -CCaaaGGCGUCGGcuUGGCG-CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 29120 0.71 0.394786
Target:  5'- cGGgaUCgGCGucGgCGGGCCGCGCUugCg -3'
miRNA:   3'- -CCaaAGgCGU--CgGCUUGGCGCGGugG- -5'
19712 3' -56.8 NC_004686.1 + 14510 0.71 0.394786
Target:  5'- ---aUCCGgAGCCGuggcGCgGCGCCaACCu -3'
miRNA:   3'- ccaaAGGCgUCGGCu---UGgCGCGG-UGG- -5'
19712 3' -56.8 NC_004686.1 + 31681 0.71 0.377251
Target:  5'- ----aCCGCAGC---ACCGuCGCCGCCg -3'
miRNA:   3'- ccaaaGGCGUCGgcuUGGC-GCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 54968 0.8 0.100936
Target:  5'- ----aCCGCAgcGCCGccuacAACCGCGCCACCg -3'
miRNA:   3'- ccaaaGGCGU--CGGC-----UUGGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 8290 0.78 0.132893
Target:  5'- uGGuUUUCCGUGGCUGGGCCuG-GCCACCg -3'
miRNA:   3'- -CC-AAAGGCGUCGGCUUGG-CgCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 26624 0.78 0.136559
Target:  5'- ----aCCGCAGcCCGGGCCGaCGCUGCCu -3'
miRNA:   3'- ccaaaGGCGUC-GGCUUGGC-GCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 39788 0.77 0.160566
Target:  5'- cGGUggggUGCAGUCGAACCGCGUugCGCCg -3'
miRNA:   3'- -CCAaag-GCGUCGGCUUGGCGCG--GUGG- -5'
19712 3' -56.8 NC_004686.1 + 53120 0.77 0.169379
Target:  5'- uGGUgcaUCCGCGGCUaGAcCCGCGUCACa -3'
miRNA:   3'- -CCAa--AGGCGUCGG-CUuGGCGCGGUGg -5'
19712 3' -56.8 NC_004686.1 + 38652 0.74 0.243919
Target:  5'- cGUcgCCGCuGCgGAAucgguguauugcCCGCGCCACCu -3'
miRNA:   3'- cCAaaGGCGuCGgCUU------------GGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 19526 0.72 0.311761
Target:  5'- ----cCCGgAGCCGGuugauacgacgccGCCGaCGCCGCCg -3'
miRNA:   3'- ccaaaGGCgUCGGCU-------------UGGC-GCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 9596 0.72 0.35195
Target:  5'- aGGUgcuacugCCGCuGUCGGGCUGCucGCUACCu -3'
miRNA:   3'- -CCAaa-----GGCGuCGGCUUGGCG--CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.