miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19712 3' -56.8 NC_004686.1 + 31035 0.67 0.615683
Target:  5'- ----aCCaGCAGCCuuGGCCGCGaCCACa -3'
miRNA:   3'- ccaaaGG-CGUCGGc-UUGGCGC-GGUGg -5'
19712 3' -56.8 NC_004686.1 + 31598 0.67 0.615683
Target:  5'- ---aUCCGCAugcGCauacACaCGCGCCACCu -3'
miRNA:   3'- ccaaAGGCGU---CGgcu-UG-GCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 1543 0.67 0.604931
Target:  5'- -----aUGCAGCCGGGCCGCagauGCgGCUc -3'
miRNA:   3'- ccaaagGCGUCGGCUUGGCG----CGgUGG- -5'
19712 3' -56.8 NC_004686.1 + 33446 0.67 0.604931
Target:  5'- ----aCCGguGaCCGcgauAGCCGCGgCGCCg -3'
miRNA:   3'- ccaaaGGCguC-GGC----UUGGCGCgGUGG- -5'
19712 3' -56.8 NC_004686.1 + 55926 0.67 0.604931
Target:  5'- ----cCCGCAcauCCaucGACCGCGCCAUCa -3'
miRNA:   3'- ccaaaGGCGUc--GGc--UUGGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 39262 0.67 0.604931
Target:  5'- gGGUUggaCCGCcacgcagaucGCCGAACagcuggGCuGCCACCa -3'
miRNA:   3'- -CCAAa--GGCGu---------CGGCUUGg-----CG-CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 24962 0.67 0.604931
Target:  5'- gGGUUUCUGC-GuuGAAaggaacccgcCCGUGCCggACCu -3'
miRNA:   3'- -CCAAAGGCGuCggCUU----------GGCGCGG--UGG- -5'
19712 3' -56.8 NC_004686.1 + 42513 0.67 0.604931
Target:  5'- cGGgaccagcgCCGCGGCUGAaucaACUGCacaGUCACCc -3'
miRNA:   3'- -CCaaa-----GGCGUCGGCU----UGGCG---CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 35013 0.67 0.594202
Target:  5'- ---gUCUGC-GCUGAACCaGUGCCAgCCc -3'
miRNA:   3'- ccaaAGGCGuCGGCUUGG-CGCGGU-GG- -5'
19712 3' -56.8 NC_004686.1 + 17554 0.67 0.594202
Target:  5'- --aUUCCGCAGCgGcGACgaagaaCGCCACCu -3'
miRNA:   3'- ccaAAGGCGUCGgC-UUGgc----GCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 22749 0.67 0.583503
Target:  5'- cGGcg-CCGCGGCU--AUCGCgGUCACCg -3'
miRNA:   3'- -CCaaaGGCGUCGGcuUGGCG-CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 46944 0.67 0.572843
Target:  5'- --gUUCCGuUAGCC--ACCG-GCCACCu -3'
miRNA:   3'- ccaAAGGC-GUCGGcuUGGCgCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 22674 0.68 0.56223
Target:  5'- cGGUgaagucgUCGgAGCUGAGCUGgGgCACCa -3'
miRNA:   3'- -CCAaa-----GGCgUCGGCUUGGCgCgGUGG- -5'
19712 3' -56.8 NC_004686.1 + 43953 0.68 0.55167
Target:  5'- aGUgcgUCCGU-GCCGAuGCCG-GCCAUCu -3'
miRNA:   3'- cCAa--AGGCGuCGGCU-UGGCgCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 46068 0.68 0.541172
Target:  5'- ------gGCGGCgucaagguucUGAACCGCGCCAUCg -3'
miRNA:   3'- ccaaaggCGUCG----------GCUUGGCGCGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 54741 0.68 0.533862
Target:  5'- ---cUCCGcCAGCUucucccaGAACCGCggcgcaucaauauccGCCACCa -3'
miRNA:   3'- ccaaAGGC-GUCGG-------CUUGGCG---------------CGGUGG- -5'
19712 3' -56.8 NC_004686.1 + 37114 0.69 0.510107
Target:  5'- cGGgccagCCGCccucaCCGAACUGCGCCAa- -3'
miRNA:   3'- -CCaaa--GGCGuc---GGCUUGGCGCGGUgg -5'
19712 3' -56.8 NC_004686.1 + 18342 0.69 0.510107
Target:  5'- uGUUUCCGguGUUaGGGCCGuCGucCCGCCg -3'
miRNA:   3'- cCAAAGGCguCGG-CUUGGC-GC--GGUGG- -5'
19712 3' -56.8 NC_004686.1 + 54848 0.69 0.510107
Target:  5'- cGUgaCCGCGGUaagGAcCCGCGCCgGCCc -3'
miRNA:   3'- cCAaaGGCGUCGg--CUuGGCGCGG-UGG- -5'
19712 3' -56.8 NC_004686.1 + 40515 0.69 0.510107
Target:  5'- ----gCUGCGGCgucAGCCGgGCCACCg -3'
miRNA:   3'- ccaaaGGCGUCGgc-UUGGCgCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.