miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19713 5' -51.9 NC_004686.1 + 28472 0.66 0.907714
Target:  5'- gCCGAGcccuUCGCCGAcugGGUUGccgaauAGCGa -3'
miRNA:   3'- gGGCUCaacuAGCGGCU---UCAAC------UCGC- -5'
19713 5' -51.9 NC_004686.1 + 22666 0.66 0.900933
Target:  5'- cUCCGAuucggUGAagUCGUCGGAGcUGAGCu -3'
miRNA:   3'- -GGGCUca---ACU--AGCGGCUUCaACUCGc -5'
19713 5' -51.9 NC_004686.1 + 35062 0.66 0.900933
Target:  5'- aCCGAGgcuggcgucUGGUCGCUGAuGUUGAucaGCc -3'
miRNA:   3'- gGGCUCa--------ACUAGCGGCUuCAACU---CGc -5'
19713 5' -51.9 NC_004686.1 + 6090 0.66 0.893879
Target:  5'- cCCCGuGUUGAUCGagUGAcGGUccgcuuuccauUGAGCGc -3'
miRNA:   3'- -GGGCuCAACUAGCg-GCU-UCA-----------ACUCGC- -5'
19713 5' -51.9 NC_004686.1 + 39254 0.66 0.893158
Target:  5'- aCCCGcaugGGUUGGaccgccacgcagaUCGCCGAacAGcUGGGCu -3'
miRNA:   3'- -GGGC----UCAACU-------------AGCGGCU--UCaACUCGc -5'
19713 5' -51.9 NC_004686.1 + 4162 0.66 0.886554
Target:  5'- -gCGGGUUGucgaccgaugCGUCGAGGUUgGGGCGu -3'
miRNA:   3'- ggGCUCAACua--------GCGGCUUCAA-CUCGC- -5'
19713 5' -51.9 NC_004686.1 + 29469 0.67 0.878965
Target:  5'- gCCGAGUUucUCGCCGAucac-GGCGa -3'
miRNA:   3'- gGGCUCAAcuAGCGGCUucaacUCGC- -5'
19713 5' -51.9 NC_004686.1 + 17875 0.67 0.878965
Target:  5'- gCCGAGUgcggcggaugUGGagUgGCCGGGuGUUGAGCu -3'
miRNA:   3'- gGGCUCA----------ACU--AgCGGCUU-CAACUCGc -5'
19713 5' -51.9 NC_004686.1 + 10598 0.67 0.863016
Target:  5'- gCCGcGcaGGUCGCCGAugcuUUGGGCGa -3'
miRNA:   3'- gGGCuCaaCUAGCGGCUuc--AACUCGC- -5'
19713 5' -51.9 NC_004686.1 + 25764 0.68 0.818997
Target:  5'- gCCCGAacugGUUGAgcaGCCGAAGUgGGGa- -3'
miRNA:   3'- -GGGCU----CAACUag-CGGCUUCAaCUCgc -5'
19713 5' -51.9 NC_004686.1 + 3464 0.69 0.78013
Target:  5'- uUCCGGGcaGA-CGCgGAGGUguuUGAGCGg -3'
miRNA:   3'- -GGGCUCaaCUaGCGgCUUCA---ACUCGC- -5'
19713 5' -51.9 NC_004686.1 + 28418 0.69 0.7493
Target:  5'- gCUGAGgcGAUCGCCGAguucGGgaaGGCGg -3'
miRNA:   3'- gGGCUCaaCUAGCGGCU----UCaacUCGC- -5'
19713 5' -51.9 NC_004686.1 + 51922 0.7 0.695648
Target:  5'- gUCCGuccGUUGAcCGCCGGAcgUGGGCGu -3'
miRNA:   3'- -GGGCu--CAACUaGCGGCUUcaACUCGC- -5'
19713 5' -51.9 NC_004686.1 + 3250 0.71 0.673667
Target:  5'- -aCGAGcUGAUCGCUGAGGcUGAaggcGCGg -3'
miRNA:   3'- ggGCUCaACUAGCGGCUUCaACU----CGC- -5'
19713 5' -51.9 NC_004686.1 + 171 0.71 0.629311
Target:  5'- gCCGGGUUGGcgggUGCCGGgcGGgUGGGCGa -3'
miRNA:   3'- gGGCUCAACUa---GCGGCU--UCaACUCGC- -5'
19713 5' -51.9 NC_004686.1 + 49547 0.74 0.49876
Target:  5'- gCCCaGAacgUGAUCGCUGggGUUGuGCa -3'
miRNA:   3'- -GGG-CUca-ACUAGCGGCuuCAACuCGc -5'
19713 5' -51.9 NC_004686.1 + 36313 1.02 0.007639
Target:  5'- gCCCGAGcUGGUCGCCGAGGUUGAGCGg -3'
miRNA:   3'- -GGGCUCaACUAGCGGCUUCAACUCGC- -5'
19713 5' -51.9 NC_004686.1 + 49209 1.11 0.00209
Target:  5'- uCCCGAGUUGAUCGCCGAAGUUGAGCGu -3'
miRNA:   3'- -GGGCUCAACUAGCGGCUUCAACUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.