Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19714 | 5' | -55.1 | NC_004686.1 | + | 31204 | 0.66 | 0.684378 |
Target: 5'- uCGUGCGGCcgucgucgcuGCGGGCGCGCa--- -3' miRNA: 3'- uGCACGCUGcuu-------CGCUUGCGCGaguu -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 49274 | 0.66 | 0.729929 |
Target: 5'- aGCGcGCGGCuGAAGU--ACGCGCUUg- -3' miRNA: 3'- -UGCaCGCUG-CUUCGcuUGCGCGAGuu -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 18998 | 0.66 | 0.729929 |
Target: 5'- gACGaucGCGAagcCGAagugGGCGAACGCGUUUGAc -3' miRNA: 3'- -UGCa--CGCU---GCU----UCGCUUGCGCGAGUU- -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 17831 | 0.66 | 0.729929 |
Target: 5'- cGCG-GCGAUGuGGUGGAUGCGCc--- -3' miRNA: 3'- -UGCaCGCUGCuUCGCUUGCGCGaguu -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 48982 | 0.66 | 0.697521 |
Target: 5'- cGCGaggGCGACGuuGUaGAGCGCGCgaaagCAGc -3' miRNA: 3'- -UGCa--CGCUGCuuCG-CUUGCGCGa----GUU- -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 47663 | 0.66 | 0.71921 |
Target: 5'- uUGUGCGGcCGAAgGUGAAUGCGUUg-- -3' miRNA: 3'- uGCACGCU-GCUU-CGCUUGCGCGAguu -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 39076 | 0.68 | 0.575957 |
Target: 5'- aGCGUGCGGCGAAuGCac-UGCGgUCAGu -3' miRNA: 3'- -UGCACGCUGCUU-CGcuuGCGCgAGUU- -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 5038 | 0.68 | 0.596895 |
Target: 5'- ---cGCGGCGAggucgucGGUGAAgGUGCUCAGa -3' miRNA: 3'- ugcaCGCUGCU-------UCGCUUgCGCGAGUU- -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 45989 | 0.68 | 0.609071 |
Target: 5'- gUGUGCGGCGGAaaCGGAUGCGCa--- -3' miRNA: 3'- uGCACGCUGCUUc-GCUUGCGCGaguu -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 51115 | 0.7 | 0.479956 |
Target: 5'- gGCG-GUGACgGGAGCGAACGuCGCcgUCGAc -3' miRNA: 3'- -UGCaCGCUG-CUUCGCUUGC-GCG--AGUU- -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 21848 | 0.7 | 0.45965 |
Target: 5'- cGCGgGCGGCGGcucCGGACGgCGCUCGAa -3' miRNA: 3'- -UGCaCGCUGCUuc-GCUUGC-GCGAGUU- -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 51515 | 0.71 | 0.410991 |
Target: 5'- gUGgggGCGugGAucgcGGCGuggGACGCGCUCAAc -3' miRNA: 3'- uGCa--CGCugCU----UCGC---UUGCGCGAGUU- -5' |
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19714 | 5' | -55.1 | NC_004686.1 | + | 49317 | 1.05 | 0.001709 |
Target: 5'- gACGUGCGACGAAGCGAACGCGCUCAAc -3' miRNA: 3'- -UGCACGCUGCUUCGCUUGCGCGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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