miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19715 3' -49.1 NC_004686.1 + 30321 0.66 0.978618
Target:  5'- -cCGu--UGAUgCAUCGGGA-CACCGCg -3'
miRNA:   3'- ccGCuuuGCUA-GUAGCUCUaGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 50187 0.66 0.978618
Target:  5'- cGGCGAu---GUCAUCGggcAGGUCugCGg -3'
miRNA:   3'- -CCGCUuugcUAGUAGC---UCUAGugGCg -5'
19715 3' -49.1 NC_004686.1 + 52156 0.66 0.978618
Target:  5'- aGUGguGCGA-CA---AGAUCACCGCa -3'
miRNA:   3'- cCGCuuUGCUaGUagcUCUAGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 29443 0.66 0.978618
Target:  5'- cGCGAuGACgGAUCGUCGuGGAUCAUgugGCu -3'
miRNA:   3'- cCGCU-UUG-CUAGUAGC-UCUAGUGg--CG- -5'
19715 3' -49.1 NC_004686.1 + 48806 0.66 0.975983
Target:  5'- cGGaCGAAugG-UCuUCGAG--UACCGCg -3'
miRNA:   3'- -CC-GCUUugCuAGuAGCUCuaGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 18793 0.66 0.975983
Target:  5'- cGGCGAuACGcAUCGUCaAG-UCGCCc- -3'
miRNA:   3'- -CCGCUuUGC-UAGUAGcUCuAGUGGcg -5'
19715 3' -49.1 NC_004686.1 + 4150 0.66 0.973415
Target:  5'- cGGCGAuggguuGCGGguugucgaccgaugCGUCGAGGUuggggcgugguuccCACUGCg -3'
miRNA:   3'- -CCGCUu-----UGCUa-------------GUAGCUCUA--------------GUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 22036 0.66 0.973117
Target:  5'- cGGCGgcGCGucgacauUCAccUCGGGuggcgugucgcUCACCGCg -3'
miRNA:   3'- -CCGCuuUGCu------AGU--AGCUCu----------AGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 23713 0.66 0.973117
Target:  5'- uGUGGAccGCuuccgGGUC--CGGGAUCACCGCa -3'
miRNA:   3'- cCGCUU--UG-----CUAGuaGCUCUAGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 52548 0.66 0.972818
Target:  5'- gGGCucAACGAccaaagaUCAUCcAGAUCAUCGa -3'
miRNA:   3'- -CCGcuUUGCU-------AGUAGcUCUAGUGGCg -5'
19715 3' -49.1 NC_004686.1 + 44935 0.66 0.970013
Target:  5'- gGGCGAuguuccucGACGAUCcuuGUCGGuagCACCGa -3'
miRNA:   3'- -CCGCU--------UUGCUAG---UAGCUcuaGUGGCg -5'
19715 3' -49.1 NC_004686.1 + 45686 0.66 0.970013
Target:  5'- cGGCcGAAUGAUUcUgGAGGcCACUGCa -3'
miRNA:   3'- -CCGcUUUGCUAGuAgCUCUaGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 16572 0.66 0.970013
Target:  5'- cGGCGgcGC-AUCAccaGAuAUCACCGCu -3'
miRNA:   3'- -CCGCuuUGcUAGUag-CUcUAGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 26937 0.67 0.96735
Target:  5'- aGGUGAAGCGGUccaggacguguacacCcgUGAGGggaaaccgggagCACCGCa -3'
miRNA:   3'- -CCGCUUUGCUA---------------GuaGCUCUa-----------GUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 52907 0.67 0.96666
Target:  5'- cGGCGcAugGcUCGcCGccuGAUCGCCGUg -3'
miRNA:   3'- -CCGCuUugCuAGUaGCu--CUAGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 3390 0.67 0.96666
Target:  5'- uGGCGGGauccGCGGUaucuGUCGAaGUCGgCGCa -3'
miRNA:   3'- -CCGCUU----UGCUAg---UAGCUcUAGUgGCG- -5'
19715 3' -49.1 NC_004686.1 + 27338 0.67 0.96666
Target:  5'- cGGCGAAcACcGUCAaCGAccacuUCGCCGCc -3'
miRNA:   3'- -CCGCUU-UGcUAGUaGCUcu---AGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 8922 0.67 0.96666
Target:  5'- cGCGGAugGAcCAUCcGAGA-CAUCGg -3'
miRNA:   3'- cCGCUUugCUaGUAG-CUCUaGUGGCg -5'
19715 3' -49.1 NC_004686.1 + 8532 0.67 0.96305
Target:  5'- cGCGGAGaagcaGAgCGaCGAGAuUCGCCGCc -3'
miRNA:   3'- cCGCUUUg----CUaGUaGCUCU-AGUGGCG- -5'
19715 3' -49.1 NC_004686.1 + 19710 0.67 0.96305
Target:  5'- cGUGGGAugguCGAUCGUCGGGAacggugUACCGg -3'
miRNA:   3'- cCGCUUU----GCUAGUAGCUCUa-----GUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.