miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19715 5' -49.8 NC_004686.1 + 30752 0.66 0.949761
Target:  5'- gCAGCACGaucGUUcGGCGAA-ACCA-CUCa -3'
miRNA:   3'- -GUUGUGCa--CGA-CCGCUUuUGGUaGAG- -5'
19715 5' -49.8 NC_004686.1 + 6277 0.66 0.949289
Target:  5'- cCAGCACGUGUUgcucaccgaucgcGGUGAucucgauGAUCGUUUCg -3'
miRNA:   3'- -GUUGUGCACGA-------------CCGCUu------UUGGUAGAG- -5'
19715 5' -49.8 NC_004686.1 + 49340 0.66 0.939752
Target:  5'- uCAACGCGc-UUGGCGAAGACaucCUCg -3'
miRNA:   3'- -GUUGUGCacGACCGCUUUUGguaGAG- -5'
19715 5' -49.8 NC_004686.1 + 14623 0.66 0.934299
Target:  5'- --uCACGUa--GGCGAGcagGGCCGUCUCg -3'
miRNA:   3'- guuGUGCAcgaCCGCUU---UUGGUAGAG- -5'
19715 5' -49.8 NC_004686.1 + 163 0.66 0.928543
Target:  5'- gCGACGCGgccggGUUGGCGGGuGCCGg--- -3'
miRNA:   3'- -GUUGUGCa----CGACCGCUUuUGGUagag -5'
19715 5' -49.8 NC_004686.1 + 12866 0.66 0.928543
Target:  5'- ---uGCGUGCacGGCGAGGACCGcggUCg- -3'
miRNA:   3'- guugUGCACGa-CCGCUUUUGGU---AGag -5'
19715 5' -49.8 NC_004686.1 + 17952 0.67 0.916121
Target:  5'- aCAGgGCGaaugaaUGUUGGCGAGGGCCAg--- -3'
miRNA:   3'- -GUUgUGC------ACGACCGCUUUUGGUagag -5'
19715 5' -49.8 NC_004686.1 + 20823 0.67 0.909457
Target:  5'- gAACG-GUGUUGGCGuccAGACguUCUCa -3'
miRNA:   3'- gUUGUgCACGACCGCu--UUUGguAGAG- -5'
19715 5' -49.8 NC_004686.1 + 26820 0.67 0.909457
Target:  5'- aCAACA---GCUGGCGGuuuGCCGUCg- -3'
miRNA:   3'- -GUUGUgcaCGACCGCUuu-UGGUAGag -5'
19715 5' -49.8 NC_004686.1 + 34032 0.67 0.902494
Target:  5'- gCAGgGCGaGCUGGUGGuugguuGCCAUgUCg -3'
miRNA:   3'- -GUUgUGCaCGACCGCUuu----UGGUAgAG- -5'
19715 5' -49.8 NC_004686.1 + 50238 0.67 0.902494
Target:  5'- --cCGCGU-CgaGGCGAAAGCCGUCg- -3'
miRNA:   3'- guuGUGCAcGa-CCGCUUUUGGUAGag -5'
19715 5' -49.8 NC_004686.1 + 12960 0.67 0.902494
Target:  5'- cCAGCACGUcc--GCGGAAGCCA-CUCg -3'
miRNA:   3'- -GUUGUGCAcgacCGCUUUUGGUaGAG- -5'
19715 5' -49.8 NC_004686.1 + 53457 0.67 0.895235
Target:  5'- ---aACGUggccuugucccGCUGcGCGguGACCGUCUCa -3'
miRNA:   3'- guugUGCA-----------CGAC-CGCuuUUGGUAGAG- -5'
19715 5' -49.8 NC_004686.1 + 18224 0.68 0.87905
Target:  5'- gCAAUAU-UGCUgaGGCGAuucagaauuucuuGGACCAUCUCg -3'
miRNA:   3'- -GUUGUGcACGA--CCGCU-------------UUUGGUAGAG- -5'
19715 5' -49.8 NC_004686.1 + 46470 0.68 0.871733
Target:  5'- aCAACG-GUGUUGGCGcagacAAACuCGUCUCc -3'
miRNA:   3'- -GUUGUgCACGACCGCu----UUUG-GUAGAG- -5'
19715 5' -49.8 NC_004686.1 + 482 0.68 0.853813
Target:  5'- -cGCugGUgaugaGCUGGCGGAGgcgcagauucguuACCGUCUg -3'
miRNA:   3'- guUGugCA-----CGACCGCUUU-------------UGGUAGAg -5'
19715 5' -49.8 NC_004686.1 + 41527 0.7 0.755871
Target:  5'- gGACACGUGUcgaUGGCGAAAGgCcgCa- -3'
miRNA:   3'- gUUGUGCACG---ACCGCUUUUgGuaGag -5'
19715 5' -49.8 NC_004686.1 + 14828 0.75 0.485603
Target:  5'- aCAGCAUGc-CUGGCGucaauGAGGCCAUCUCa -3'
miRNA:   3'- -GUUGUGCacGACCGC-----UUUUGGUAGAG- -5'
19715 5' -49.8 NC_004686.1 + 49931 1.09 0.003329
Target:  5'- gCAACACGUGCUGGCGAAAACCAUCUCc -3'
miRNA:   3'- -GUUGUGCACGACCGCUUUUGGUAGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.