miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19716 3' -58.9 NC_004686.1 + 15093 0.66 0.594049
Target:  5'- uUCUGGGCaACCAaaacUACCAUCUCC-UGCa -3'
miRNA:   3'- -GGGCCUG-UGGU----GUGGUGGAGGuGCGg -5'
19716 3' -58.9 NC_004686.1 + 10096 0.66 0.594049
Target:  5'- gCCCGGGgucacgguguUACCAgCACCGC--CCGgGCCg -3'
miRNA:   3'- -GGGCCU----------GUGGU-GUGGUGgaGGUgCGG- -5'
19716 3' -58.9 NC_004686.1 + 44124 0.66 0.592998
Target:  5'- gCCUGGuCgAUCAgACCguugaucGCCUCgGCGCCc -3'
miRNA:   3'- -GGGCCuG-UGGUgUGG-------UGGAGgUGCGG- -5'
19716 3' -58.9 NC_004686.1 + 36819 0.66 0.592998
Target:  5'- aCUGGGCACCuucugauGC-CCGCCcgCCAaauacugcuCGCCg -3'
miRNA:   3'- gGGCCUGUGG-------UGuGGUGGa-GGU---------GCGG- -5'
19716 3' -58.9 NC_004686.1 + 13118 0.66 0.592998
Target:  5'- aCCUGGACGCCAaguacgcgaaaauUAgCGUCUCCACGg- -3'
miRNA:   3'- -GGGCCUGUGGU-------------GUgGUGGAGGUGCgg -5'
19716 3' -58.9 NC_004686.1 + 27336 0.66 0.583555
Target:  5'- aCCGGcgaACACCgucaACgACCACUUCgC-CGCCa -3'
miRNA:   3'- gGGCC---UGUGG----UG-UGGUGGAG-GuGCGG- -5'
19716 3' -58.9 NC_004686.1 + 45027 0.66 0.583555
Target:  5'- aUCCGGGgAUCGCACCGgCgcggauCGCCg -3'
miRNA:   3'- -GGGCCUgUGGUGUGGUgGaggu--GCGG- -5'
19716 3' -58.9 NC_004686.1 + 5402 0.66 0.582508
Target:  5'- cCCCGGACGgugUCGCGCuggacaaCACCUUcucguucaugCugGCCa -3'
miRNA:   3'- -GGGCCUGU---GGUGUG-------GUGGAG----------GugCGG- -5'
19716 3' -58.9 NC_004686.1 + 44231 0.66 0.573099
Target:  5'- aUCGGGCACUggGCGaaACgCUCCAcuCGCCg -3'
miRNA:   3'- gGGCCUGUGG--UGUggUG-GAGGU--GCGG- -5'
19716 3' -58.9 NC_004686.1 + 45791 0.66 0.573099
Target:  5'- gCCCa-ACACUuCAuCCGCCgacaCCACGCCu -3'
miRNA:   3'- -GGGccUGUGGuGU-GGUGGa---GGUGCGG- -5'
19716 3' -58.9 NC_004686.1 + 34736 0.66 0.573099
Target:  5'- gCCGGcUACgGCaACCGCaaggaacguCUCUACGCCu -3'
miRNA:   3'- gGGCCuGUGgUG-UGGUG---------GAGGUGCGG- -5'
19716 3' -58.9 NC_004686.1 + 38932 0.66 0.573099
Target:  5'- gCCGuGAuCACCGCACgGgugaaCUCgACGCCc -3'
miRNA:   3'- gGGC-CU-GUGGUGUGgUg----GAGgUGCGG- -5'
19716 3' -58.9 NC_004686.1 + 39430 0.66 0.56997
Target:  5'- aCCCGGAgGCgAUuuCCACC-CCGuaguaaugagucauCGCCg -3'
miRNA:   3'- -GGGCCUgUGgUGu-GGUGGaGGU--------------GCGG- -5'
19716 3' -58.9 NC_004686.1 + 32978 0.66 0.562687
Target:  5'- gCCuGuuGCCGCACC-UC-CCGCGCCu -3'
miRNA:   3'- gGGcCugUGGUGUGGuGGaGGUGCGG- -5'
19716 3' -58.9 NC_004686.1 + 28037 0.66 0.562687
Target:  5'- aCCCGGAgUACCAC-CCGgagUgGCGCCa -3'
miRNA:   3'- -GGGCCU-GUGGUGuGGUggaGgUGCGG- -5'
19716 3' -58.9 NC_004686.1 + 8515 0.66 0.552327
Target:  5'- aCCaCGaACACCGCACCgucaacgcauucACCUUCG-GCCg -3'
miRNA:   3'- -GG-GCcUGUGGUGUGG------------UGGAGGUgCGG- -5'
19716 3' -58.9 NC_004686.1 + 55247 0.66 0.552327
Target:  5'- cCCCGGACGCgACAaacaaaUCGCgaCCA-GCCc -3'
miRNA:   3'- -GGGCCUGUGgUGU------GGUGgaGGUgCGG- -5'
19716 3' -58.9 NC_004686.1 + 14181 0.66 0.552327
Target:  5'- gCCGG-CugCAUuCCAguuCCcCCGCGCCu -3'
miRNA:   3'- gGGCCuGugGUGuGGU---GGaGGUGCGG- -5'
19716 3' -58.9 NC_004686.1 + 33826 0.66 0.552327
Target:  5'- gCCGGugcCGCCAuuggagccguCACCGCUgccgCC-CGCCg -3'
miRNA:   3'- gGGCCu--GUGGU----------GUGGUGGa---GGuGCGG- -5'
19716 3' -58.9 NC_004686.1 + 23974 0.66 0.546139
Target:  5'- gCCGGGUACCugGCUguauGCCUUCACuguguugagggcaagGCCa -3'
miRNA:   3'- gGGCCUGUGGugUGG----UGGAGGUG---------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.