miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19717 3' -55.5 NC_004686.1 + 41677 0.66 0.719624
Target:  5'- cGUAGCGgaGGUUGGc---GCCGCGCc -3'
miRNA:   3'- aCGUCGCaaCUAGCUcucuCGGCGCG- -5'
19717 3' -55.5 NC_004686.1 + 34328 0.66 0.719624
Target:  5'- cGUAGCGauacccgGAguUCGAGcgccguccGGAGCCGcCGCc -3'
miRNA:   3'- aCGUCGCaa-----CU--AGCUC--------UCUCGGC-GCG- -5'
19717 3' -55.5 NC_004686.1 + 23822 0.66 0.708913
Target:  5'- cGCGGCGag---CG-GAGAGCCgagaagGCGCa -3'
miRNA:   3'- aCGUCGCaacuaGCuCUCUCGG------CGCG- -5'
19717 3' -55.5 NC_004686.1 + 927 0.66 0.698127
Target:  5'- gUGgGGUGUcaUGGUCGGGcuGGUCGCGa -3'
miRNA:   3'- -ACgUCGCA--ACUAGCUCucUCGGCGCg -5'
19717 3' -55.5 NC_004686.1 + 43550 0.66 0.676374
Target:  5'- gGCAGCGgcauUGGUgGGGAGuccucagugauAGCCaccaGCGCc -3'
miRNA:   3'- aCGUCGCa---ACUAgCUCUC-----------UCGG----CGCG- -5'
19717 3' -55.5 NC_004686.1 + 49060 0.67 0.655552
Target:  5'- gGCAGCGagGAcgcccugguggucagCGAGGGAGa-GCGCg -3'
miRNA:   3'- aCGUCGCaaCUa--------------GCUCUCUCggCGCG- -5'
19717 3' -55.5 NC_004686.1 + 167 0.67 0.654453
Target:  5'- cGCGGCcg-GGUUGGcGGGuGCCGgGCg -3'
miRNA:   3'- aCGUCGcaaCUAGCU-CUCuCGGCgCG- -5'
19717 3' -55.5 NC_004686.1 + 4666 0.67 0.621443
Target:  5'- gGCGGCGUUGAgcgCGucccacGCCGCGa -3'
miRNA:   3'- aCGUCGCAACUa--GCucucu-CGGCGCg -5'
19717 3' -55.5 NC_004686.1 + 7274 0.68 0.588515
Target:  5'- aGCAGCGg----CGAGaAGGGCgGCGg -3'
miRNA:   3'- aCGUCGCaacuaGCUC-UCUCGgCGCg -5'
19717 3' -55.5 NC_004686.1 + 1717 0.68 0.555914
Target:  5'- cUGCu-UGUUGGcgCGAGGGAGaguCCGCGCa -3'
miRNA:   3'- -ACGucGCAACUa-GCUCUCUC---GGCGCG- -5'
19717 3' -55.5 NC_004686.1 + 7012 0.68 0.555914
Target:  5'- gGUGGCGU---UCGAGGaAGCCGcCGCg -3'
miRNA:   3'- aCGUCGCAacuAGCUCUcUCGGC-GCG- -5'
19717 3' -55.5 NC_004686.1 + 3750 0.69 0.545159
Target:  5'- gGCGGCGgacUGGUaCGAc-GAGCUGCGUg -3'
miRNA:   3'- aCGUCGCa--ACUA-GCUcuCUCGGCGCG- -5'
19717 3' -55.5 NC_004686.1 + 49538 0.69 0.500806
Target:  5'- aGCAGCGaagcccagaacgUGAUCGcuGGGGuuGUGCa -3'
miRNA:   3'- aCGUCGCa-----------ACUAGCucUCUCggCGCG- -5'
19717 3' -55.5 NC_004686.1 + 24305 0.69 0.492534
Target:  5'- gGCAGCGgugGAuuUCGAuuguGGAGCCGuUGCg -3'
miRNA:   3'- aCGUCGCaa-CU--AGCUc---UCUCGGC-GCG- -5'
19717 3' -55.5 NC_004686.1 + 30126 0.7 0.481264
Target:  5'- gGCAGCGUUuucaaccGGUCaccGAGAGCaggGCGCa -3'
miRNA:   3'- aCGUCGCAA-------CUAGcu-CUCUCGg--CGCG- -5'
19717 3' -55.5 NC_004686.1 + 35219 0.7 0.452177
Target:  5'- cGCAGUGggUGGUUGAGGcuGAGaCuCGCGCc -3'
miRNA:   3'- aCGUCGCa-ACUAGCUCU--CUC-G-GCGCG- -5'
19717 3' -55.5 NC_004686.1 + 29112 0.8 0.109574
Target:  5'- aGCAGCGUcggGAUCGgcgucGGcGGGCCGCGCu -3'
miRNA:   3'- aCGUCGCAa--CUAGC-----UCuCUCGGCGCG- -5'
19717 3' -55.5 NC_004686.1 + 50403 1.12 0.000531
Target:  5'- gUGCAGCGUUGAUCGAGAGAGCCGCGCa -3'
miRNA:   3'- -ACGUCGCAACUAGCUCUCUCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.