Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19717 | 5' | -58.4 | NC_004686.1 | + | 3299 | 0.69 | 0.363514 |
Target: 5'- -gGCGAGccaugcGCCGCauGAUCCuGGCCGCc -3' miRNA: 3'- gaCGCUU------UGGUGgcCUAGG-CCGGCGu -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 24288 | 0.7 | 0.355174 |
Target: 5'- gUGCGAcAACCA-CGGAaCCGGCCacgGCAu -3' miRNA: 3'- gACGCU-UUGGUgGCCUaGGCCGG---CGU- -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 5751 | 0.7 | 0.34697 |
Target: 5'- -gGgGAAcauGCgGCCGGAUCCGGUgguuuCGCAg -3' miRNA: 3'- gaCgCUU---UGgUGGCCUAGGCCG-----GCGU- -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 8193 | 0.7 | 0.34697 |
Target: 5'- cCUGCGAAggGCUcgcauCCGGAgaacCCGGCCgGCGu -3' miRNA: 3'- -GACGCUU--UGGu----GGCCUa---GGCCGG-CGU- -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 41321 | 0.7 | 0.338902 |
Target: 5'- -gGCGAGACCACCcaaGAugUCaaaGGCCGCc -3' miRNA: 3'- gaCGCUUUGGUGGc--CU--AGg--CCGGCGu -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 29143 | 0.7 | 0.330971 |
Target: 5'- -gGUGAAGaugaucggcuUCACCGGAUCCGGgCGUu -3' miRNA: 3'- gaCGCUUU----------GGUGGCCUAGGCCgGCGu -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 53367 | 0.71 | 0.308005 |
Target: 5'- -aGCGuugcuGACgCACCGGAUCCGGCa--- -3' miRNA: 3'- gaCGCu----UUG-GUGGCCUAGGCCGgcgu -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 23712 | 0.71 | 0.308005 |
Target: 5'- gUGUGGAccGCUuCCGGGUCCGGgaucaCCGCAc -3' miRNA: 3'- gACGCUU--UGGuGGCCUAGGCC-----GGCGU- -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 22165 | 0.71 | 0.286276 |
Target: 5'- cCU-CGAuGCCACUGGuuuuUCCGGCgGCAa -3' miRNA: 3'- -GAcGCUuUGGUGGCCu---AGGCCGgCGU- -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 30362 | 0.71 | 0.272473 |
Target: 5'- -gGCGAAACCGuuGaucuGUcCCGGCCGCGg -3' miRNA: 3'- gaCGCUUUGGUggCc---UA-GGCCGGCGU- -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 33840 | 0.75 | 0.170425 |
Target: 5'- gCUGCGAcggcGACUuggGCCGGGgugacgcgaaggCCGGCCGCGa -3' miRNA: 3'- -GACGCU----UUGG---UGGCCUa-----------GGCCGGCGU- -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 16800 | 0.77 | 0.117335 |
Target: 5'- uCUGCGAAgcACCAUCGGccagcAUCCGcGCCGCu -3' miRNA: 3'- -GACGCUU--UGGUGGCC-----UAGGC-CGGCGu -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 50017 | 0.79 | 0.081805 |
Target: 5'- uUGCGAuugcaGAgCACCGGAUCCGGCUuGCGa -3' miRNA: 3'- gACGCU-----UUgGUGGCCUAGGCCGG-CGU- -5' |
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19717 | 5' | -58.4 | NC_004686.1 | + | 50437 | 1.08 | 0.000646 |
Target: 5'- uCUGCGAAACCACCGGAUCCGGCCGCAu -3' miRNA: 3'- -GACGCUUUGGUGGCCUAGGCCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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