miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19718 3' -53.4 NC_004686.1 + 33295 0.66 0.80799
Target:  5'- -aCCCUccUGAUCGGUCcCAAGAUaCGg -3'
miRNA:   3'- gaGGGAaaACUGGCCGGcGUUCUA-GC- -5'
19718 3' -53.4 NC_004686.1 + 33619 0.67 0.747539
Target:  5'- gUCCCgacaagGGCUGGCCGCcggugaugguGAGggCGg -3'
miRNA:   3'- gAGGGaaaa--CUGGCCGGCG----------UUCuaGC- -5'
19718 3' -53.4 NC_004686.1 + 48683 0.68 0.726308
Target:  5'- gUCCUUgcuggUUUGACCaGCCGUAGGAg-- -3'
miRNA:   3'- gAGGGA-----AAACUGGcCGGCGUUCUagc -5'
19718 3' -53.4 NC_004686.1 + 15234 0.68 0.715542
Target:  5'- aUCUggaugGACCGcGcCCGCAAGAUCGa -3'
miRNA:   3'- gAGGgaaaaCUGGC-C-GGCGUUCUAGC- -5'
19718 3' -53.4 NC_004686.1 + 16983 0.68 0.704693
Target:  5'- aUUCCUcacgGGCCuGGCCGCcggcGGGUCGg -3'
miRNA:   3'- gAGGGAaaa-CUGG-CCGGCGu---UCUAGC- -5'
19718 3' -53.4 NC_004686.1 + 33873 0.69 0.627357
Target:  5'- --------aGGCCGGCCGCGAGggCGa -3'
miRNA:   3'- gagggaaaaCUGGCCGGCGUUCuaGC- -5'
19718 3' -53.4 NC_004686.1 + 23933 0.71 0.550171
Target:  5'- -aCCCU--UGACgCGGCCGaCAAGGcaUCGg -3'
miRNA:   3'- gaGGGAaaACUG-GCCGGC-GUUCU--AGC- -5'
19718 3' -53.4 NC_004686.1 + 18121 0.71 0.507327
Target:  5'- uCUCCCaaugGugCGGCgGCAGGAaCGg -3'
miRNA:   3'- -GAGGGaaaaCugGCCGgCGUUCUaGC- -5'
19718 3' -53.4 NC_004686.1 + 15911 0.74 0.353678
Target:  5'- uUCUCggguacUGGCCGGCCGCuGAGGUCa -3'
miRNA:   3'- gAGGGaaa---ACUGGCCGGCG-UUCUAGc -5'
19718 3' -53.4 NC_004686.1 + 9150 0.78 0.221406
Target:  5'- gUCCCUcugacaagccGCCGGCCGUGAGAUCGg -3'
miRNA:   3'- gAGGGAaaac------UGGCCGGCGUUCUAGC- -5'
19718 3' -53.4 NC_004686.1 + 50556 1.09 0.001676
Target:  5'- cCUCCCUUUUGACCGGCCGCAAGAUCGu -3'
miRNA:   3'- -GAGGGAAAACUGGCCGGCGUUCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.