miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19718 5' -52 NC_004686.1 + 23836 0.66 0.892502
Target:  5'- aGCCGAgaaggcgCACGUgcugcUGaACCGGGCguuGAAGGa -3'
miRNA:   3'- -CGGCUa------GUGUA-----AC-UGGCCCGg--UUUCU- -5'
19718 5' -52 NC_004686.1 + 46101 0.66 0.892502
Target:  5'- uGCUGGUaaCACcgUGAccCCGGGCCuaaccacuGGAu -3'
miRNA:   3'- -CGGCUA--GUGuaACU--GGCCCGGuu------UCU- -5'
19718 5' -52 NC_004686.1 + 7683 0.66 0.877329
Target:  5'- gGCCGAuUCAaagaaUGugUGGGCCGcAGGc -3'
miRNA:   3'- -CGGCU-AGUgua--ACugGCCCGGUuUCU- -5'
19718 5' -52 NC_004686.1 + 51297 0.66 0.876542
Target:  5'- cGCUGGaacaguaUCuGCAc-GACCGGGgCCAAAGAa -3'
miRNA:   3'- -CGGCU-------AG-UGUaaCUGGCCC-GGUUUCU- -5'
19718 5' -52 NC_004686.1 + 12445 0.66 0.868533
Target:  5'- cGCCGAUgcCACAUcagGgcaauggggcaccGCCGGGaCCGGGGGc -3'
miRNA:   3'- -CGGCUA--GUGUAa--C-------------UGGCCC-GGUUUCU- -5'
19718 5' -52 NC_004686.1 + 9414 0.67 0.852616
Target:  5'- aUCGGgaaCGgGUUGGgCGGGUCGAAGAa -3'
miRNA:   3'- cGGCUa--GUgUAACUgGCCCGGUUUCU- -5'
19718 5' -52 NC_004686.1 + 44695 0.67 0.834926
Target:  5'- aGUCGAUCGCGggGAUCGcGCCAc--- -3'
miRNA:   3'- -CGGCUAGUGUaaCUGGCcCGGUuucu -5'
19718 5' -52 NC_004686.1 + 50646 0.68 0.776872
Target:  5'- -gCGGUCACAgccuCCGGGCCGccacGGAc -3'
miRNA:   3'- cgGCUAGUGUaacuGGCCCGGUu---UCU- -5'
19718 5' -52 NC_004686.1 + 34929 0.68 0.776872
Target:  5'- cGCacaGAcccCACAUUGgucACCGGGCCGAAc- -3'
miRNA:   3'- -CGg--CUa--GUGUAAC---UGGCCCGGUUUcu -5'
19718 5' -52 NC_004686.1 + 11784 0.68 0.766584
Target:  5'- cGCCgGAUC-CAUguauggGGCUGGGgCGAAGGg -3'
miRNA:   3'- -CGG-CUAGuGUAa-----CUGGCCCgGUUUCU- -5'
19718 5' -52 NC_004686.1 + 26614 0.69 0.734905
Target:  5'- cGCCGAUCgaaccGCAgc--CCGGGCCGAc-- -3'
miRNA:   3'- -CGGCUAG-----UGUaacuGGCCCGGUUucu -5'
19718 5' -52 NC_004686.1 + 36114 0.69 0.734905
Target:  5'- -gUGAUguUGUUGAgCGGGCCAAAGu -3'
miRNA:   3'- cgGCUAguGUAACUgGCCCGGUUUCu -5'
19718 5' -52 NC_004686.1 + 9771 0.7 0.69122
Target:  5'- aGCCGAUgaACGUgaGCCGGGUCGAGa- -3'
miRNA:   3'- -CGGCUAg-UGUAacUGGCCCGGUUUcu -5'
19718 5' -52 NC_004686.1 + 14913 0.7 0.657792
Target:  5'- cGCUGAUCACAaugUGACCcaguGGGCUc-GGAu -3'
miRNA:   3'- -CGGCUAGUGUa--ACUGG----CCCGGuuUCU- -5'
19718 5' -52 NC_004686.1 + 9214 0.71 0.590551
Target:  5'- gGCCGAUCACAUUcGgCGGcGCCGugcacAGAa -3'
miRNA:   3'- -CGGCUAGUGUAAcUgGCC-CGGUu----UCU- -5'
19718 5' -52 NC_004686.1 + 47396 0.72 0.579415
Target:  5'- gGCCGA-CGUGUUGGCCGGGgugaCGAAGAu -3'
miRNA:   3'- -CGGCUaGUGUAACUGGCCCg---GUUUCU- -5'
19718 5' -52 NC_004686.1 + 50590 1.12 0.001517
Target:  5'- uGCCGAUCACAUUGACCGGGCCAAAGAg -3'
miRNA:   3'- -CGGCUAGUGUAACUGGCCCGGUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.