Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19719 | 3' | -53 | NC_004686.1 | + | 29966 | 0.66 | 0.809035 |
Target: 5'- -gACGGUgccGUCAGGUgCgaugugaauguugGCGAGUGGGc -3' miRNA: 3'- caUGCCG---CAGUUCAgGa------------UGCUCACCU- -5' |
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19719 | 3' | -53 | NC_004686.1 | + | 21511 | 0.67 | 0.803255 |
Target: 5'- uUugGGCGUCGauggcggugAGUCUUAgGAuugcuGUGGAu -3' miRNA: 3'- cAugCCGCAGU---------UCAGGAUgCU-----CACCU- -5' |
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19719 | 3' | -53 | NC_004686.1 | + | 40876 | 0.67 | 0.787524 |
Target: 5'- aUGCGGUGaUCGGGUCgUugGAcaggaucgcagacagGUGGAc -3' miRNA: 3'- cAUGCCGC-AGUUCAGgAugCU---------------CACCU- -5' |
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19719 | 3' | -53 | NC_004686.1 | + | 120 | 0.69 | 0.699091 |
Target: 5'- -cACGGCGUCGcgGGUCCaccggucGCGGGUGc- -3' miRNA: 3'- caUGCCGCAGU--UCAGGa------UGCUCACcu -5' |
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19719 | 3' | -53 | NC_004686.1 | + | 4241 | 0.74 | 0.3928 |
Target: 5'- -gACGGCGUCGAGgcaC-AUGGGUGGAc -3' miRNA: 3'- caUGCCGCAGUUCag-GaUGCUCACCU- -5' |
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19719 | 3' | -53 | NC_004686.1 | + | 50783 | 1.09 | 0.001836 |
Target: 5'- aGUACGGCGUCAAGUCCUACGAGUGGAc -3' miRNA: 3'- -CAUGCCGCAGUUCAGGAUGCUCACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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