Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19719 | 5' | -58.3 | NC_004686.1 | + | 5040 | 0.69 | 0.424625 |
Target: 5'- -aCCCGACauCGCUGGGCaauucaUCGGCGuuGa -3' miRNA: 3'- cgGGGCUG--GCGACCUGa-----AGUUGCggC- -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 46454 | 0.69 | 0.419106 |
Target: 5'- -gCCCGAaaGCggugcccuucaccGACUUCAACGCCGa -3' miRNA: 3'- cgGGGCUggCGac-----------CUGAAGUUGCGGC- -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 12119 | 0.69 | 0.406401 |
Target: 5'- gGCUUCGGCUGCcgcaacggcGGGCaguUUCGGCGCCGg -3' miRNA: 3'- -CGGGGCUGGCGa--------CCUG---AAGUUGCGGC- -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 42540 | 0.69 | 0.380004 |
Target: 5'- aGCCCCG-CCGUgucccGGAUUU-GACGCUGg -3' miRNA: 3'- -CGGGGCuGGCGa----CCUGAAgUUGCGGC- -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 16735 | 0.7 | 0.363056 |
Target: 5'- aCCCUGGCCGC-GGAaau--GCGCCGa -3' miRNA: 3'- cGGGGCUGGCGaCCUgaaguUGCGGC- -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 30378 | 0.7 | 0.354781 |
Target: 5'- uGUCCCGGCCGC-GGGC--CGGCGCa- -3' miRNA: 3'- -CGGGGCUGGCGaCCUGaaGUUGCGgc -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 51125 | 0.7 | 0.354781 |
Target: 5'- aGCCUgGACUGUggUGGGuagaggUCAACGCCGa -3' miRNA: 3'- -CGGGgCUGGCG--ACCUga----AGUUGCGGC- -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 2238 | 0.7 | 0.346639 |
Target: 5'- cGCCCUGAUCaaUGGGCUUCucGCGCa- -3' miRNA: 3'- -CGGGGCUGGcgACCUGAAGu-UGCGgc -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 26370 | 0.74 | 0.191059 |
Target: 5'- cGCCCCGACCuGCccaaGGGCUaCGAcccCGCCGa -3' miRNA: 3'- -CGGGGCUGG-CGa---CCUGAaGUU---GCGGC- -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 56072 | 0.8 | 0.082587 |
Target: 5'- aCCCgCGACCGgUGGACccgCGACGCCGu -3' miRNA: 3'- cGGG-GCUGGCgACCUGaa-GUUGCGGC- -5' |
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19719 | 5' | -58.3 | NC_004686.1 | + | 50819 | 1.1 | 0.000463 |
Target: 5'- uGCCCCGACCGCUGGACUUCAACGCCGa -3' miRNA: 3'- -CGGGGCUGGCGACCUGAAGUUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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