miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19720 3' -59.5 NC_004686.1 + 12155 0.66 0.522383
Target:  5'- -cGGCGgucagGCCGCGgggCCAG-CGGcGGCGu -3'
miRNA:   3'- cuUCGU-----UGGCGCa--GGUCuGCCcCCGC- -5'
19720 3' -59.5 NC_004686.1 + 47804 0.66 0.512175
Target:  5'- -uGGCGGCUacggGCGcUuuGGcGCGGGGGCGg -3'
miRNA:   3'- cuUCGUUGG----CGC-AggUC-UGCCCCCGC- -5'
19720 3' -59.5 NC_004686.1 + 14324 0.66 0.482074
Target:  5'- uGAGCGGCCaugggacaGCG-CCGGuuGGGGGaCGg -3'
miRNA:   3'- cUUCGUUGG--------CGCaGGUCugCCCCC-GC- -5'
19720 3' -59.5 NC_004686.1 + 5902 0.67 0.462488
Target:  5'- aGAAGgAugCGCGUCUGGcCGGuGGCu -3'
miRNA:   3'- -CUUCgUugGCGCAGGUCuGCCcCCGc -5'
19720 3' -59.5 NC_004686.1 + 21162 0.67 0.452853
Target:  5'- cAGGCGuuguuCCGCG-CC--GCGGGGGCu -3'
miRNA:   3'- cUUCGUu----GGCGCaGGucUGCCCCCGc -5'
19720 3' -59.5 NC_004686.1 + 45428 0.67 0.451896
Target:  5'- ---aCGAaCGCGUCCAGggcggcuugcgccGCGGGGGUGc -3'
miRNA:   3'- cuucGUUgGCGCAGGUC-------------UGCCCCCGC- -5'
19720 3' -59.5 NC_004686.1 + 11544 0.67 0.443329
Target:  5'- cGGGCAGCCGUa-CCAGuACG-GGGCGu -3'
miRNA:   3'- cUUCGUUGGCGcaGGUC-UGCcCCCGC- -5'
19720 3' -59.5 NC_004686.1 + 12467 0.67 0.415451
Target:  5'- uGggGC-ACCGC--CgGGAcCGGGGGCGc -3'
miRNA:   3'- -CuuCGuUGGCGcaGgUCU-GCCCCCGC- -5'
19720 3' -59.5 NC_004686.1 + 2697 0.69 0.34664
Target:  5'- --uGCuuGCCGCGgu--GACGGGGGUGg -3'
miRNA:   3'- cuuCGu-UGGCGCagguCUGCCCCCGC- -5'
19720 3' -59.5 NC_004686.1 + 164 0.7 0.300632
Target:  5'- cGAcGCGGCCGgGUuggcgggugCCGGGCGGguGGGCGa -3'
miRNA:   3'- -CUuCGUUGGCgCA---------GGUCUGCC--CCCGC- -5'
19720 3' -59.5 NC_004686.1 + 54074 0.74 0.146661
Target:  5'- --cGCGACUGUucCCAGACGGGcGGCGa -3'
miRNA:   3'- cuuCGUUGGCGcaGGUCUGCCC-CCGC- -5'
19720 3' -59.5 NC_004686.1 + 51005 1.08 0.000463
Target:  5'- uGAAGCAACCGCGUCCAGACGGGGGCGa -3'
miRNA:   3'- -CUUCGUUGGCGCAGGUCUGCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.