Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 51623 | 1.1 | 0.000646 |
Target: 5'- gCAGACAUCUACGCCCACCUCGCCGACg -3' miRNA: 3'- -GUCUGUAGAUGCGGGUGGAGCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 27063 | 0.74 | 0.226846 |
Target: 5'- uCAGACAUCcGCaagcgcgGCCCGCCgaCGCCGAUc -3' miRNA: 3'- -GUCUGUAGaUG-------CGGGUGGa-GCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 10343 | 0.72 | 0.314187 |
Target: 5'- uCGGACAUCauagaagcuguCGCCgGCCUCGCUGGu -3' miRNA: 3'- -GUCUGUAGau---------GCGGgUGGAGCGGCUg -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 41382 | 0.71 | 0.331401 |
Target: 5'- cCAGGCAUgCUGUGCCCGCCcaCGuuGACc -3' miRNA: 3'- -GUCUGUA-GAUGCGGGUGGa-GCggCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 52545 | 0.69 | 0.44672 |
Target: 5'- aGGugAUCccaAUGCCCACCUuCGCC-ACa -3' miRNA: 3'- gUCugUAGa--UGCGGGUGGA-GCGGcUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 54833 | 0.69 | 0.476361 |
Target: 5'- aCGGACGcuUCUucaccgGCGCCaaaGCCUuaucaCGCCGGCg -3' miRNA: 3'- -GUCUGU--AGA------UGCGGg--UGGA-----GCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 7110 | 0.68 | 0.496654 |
Target: 5'- -uGGCGUUUggcucGCGCUCucCCUCGCUGACc -3' miRNA: 3'- guCUGUAGA-----UGCGGGu-GGAGCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 15713 | 0.67 | 0.538336 |
Target: 5'- -cGACG-CUGCGCaaggaucgCCGCCU-GCCGGCa -3' miRNA: 3'- guCUGUaGAUGCG--------GGUGGAgCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 55544 | 0.67 | 0.538336 |
Target: 5'- -cGGCAUCgaaaGCCacaACCUUGCCGGa -3' miRNA: 3'- guCUGUAGaug-CGGg--UGGAGCGGCUg -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 36821 | 0.67 | 0.548951 |
Target: 5'- uGGGCAccuUCUgAUGCCCGCC-CGCCa-- -3' miRNA: 3'- gUCUGU---AGA-UGCGGGUGGaGCGGcug -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 53374 | 0.67 | 0.550016 |
Target: 5'- aCGGACGcuUCgGCGCaggcuuguacggcaaCACCUgCGCCGGCa -3' miRNA: 3'- -GUCUGU--AGaUGCGg--------------GUGGA-GCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 22500 | 0.67 | 0.55963 |
Target: 5'- cCAGuucCGUCgUACGCCCA---CGCCGGCg -3' miRNA: 3'- -GUCu--GUAG-AUGCGGGUggaGCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 38178 | 0.67 | 0.55963 |
Target: 5'- gCAG-CAUgaACGCCCGCaC-CGUCGACc -3' miRNA: 3'- -GUCuGUAgaUGCGGGUG-GaGCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 56011 | 0.67 | 0.581151 |
Target: 5'- -cGGCAccguCGCCCACC-CGcCCGGCa -3' miRNA: 3'- guCUGUagauGCGGGUGGaGC-GGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 52592 | 0.67 | 0.581151 |
Target: 5'- --cGCAUCaccgACGCCCuccacaacguucGCCUCGCCcGCg -3' miRNA: 3'- gucUGUAGa---UGCGGG------------UGGAGCGGcUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 46751 | 0.66 | 0.602838 |
Target: 5'- -cGGCGUCUGCaCCaGCCUUGgCGGCu -3' miRNA: 3'- guCUGUAGAUGcGGgUGGAGCgGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 39196 | 0.66 | 0.635531 |
Target: 5'- ---cCAUgaUUACGCCgACC-CGCCGGCg -3' miRNA: 3'- gucuGUA--GAUGCGGgUGGaGCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 17002 | 0.66 | 0.644254 |
Target: 5'- aGGACAcggccggUCaUGCGcCCCACCUcugcgccCGUCGGCa -3' miRNA: 3'- gUCUGU-------AG-AUGC-GGGUGGA-------GCGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 14272 | 0.66 | 0.657326 |
Target: 5'- aGGACcgCUGCgGCCCACgauUUC-CCGGCc -3' miRNA: 3'- gUCUGuaGAUG-CGGGUG---GAGcGGCUG- -5' |
|||||||
19721 | 5' | -56.8 | NC_004686.1 | + | 34181 | 0.66 | 0.657326 |
Target: 5'- -cGcCGUCgGCGCCguCCUUGCCGuCa -3' miRNA: 3'- guCuGUAGaUGCGGguGGAGCGGCuG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home