miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19722 3' -54.1 NC_004686.1 + 23047 0.67 0.735591
Target:  5'- uGugGCGUUGGUgGcUAGCCCcgGCGGCa -3'
miRNA:   3'- -CugCGUAGCCAgCuGUUGGG--CGUUGg -5'
19722 3' -54.1 NC_004686.1 + 52622 0.67 0.73454
Target:  5'- uGGCGcCAUuguucgacCGGUCGaucagagcuugcaGCGugCCGCGGCCc -3'
miRNA:   3'- -CUGC-GUA--------GCCAGC-------------UGUugGGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 30325 0.67 0.725038
Target:  5'- uGAUGCAUCGG--GACA--CCGCGACg -3'
miRNA:   3'- -CUGCGUAGCCagCUGUugGGCGUUGg -5'
19722 3' -54.1 NC_004686.1 + 53109 0.68 0.714393
Target:  5'- cACGCAUCuGGUgGuGC-AUCCGCGGCUa -3'
miRNA:   3'- cUGCGUAG-CCAgC-UGuUGGGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 32277 0.68 0.714393
Target:  5'- -cCGCGUCaagGGUUGGCucCCCGaGACCa -3'
miRNA:   3'- cuGCGUAG---CCAGCUGuuGGGCgUUGG- -5'
19722 3' -54.1 NC_004686.1 + 25803 0.68 0.703667
Target:  5'- --aGCGUCcuGGUacuggcugugCGcCGGCCCGCGGCCg -3'
miRNA:   3'- cugCGUAG--CCA----------GCuGUUGGGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 27147 0.68 0.692872
Target:  5'- aGGCGUGUgucacuggaaacCGGUCGGCGACugggacaccaCCGCGuuGCCg -3'
miRNA:   3'- -CUGCGUA------------GCCAGCUGUUG----------GGCGU--UGG- -5'
19722 3' -54.1 NC_004686.1 + 52996 0.68 0.68093
Target:  5'- -cCGaCGUCGGauUCGACAACCCagaaaucGCcACCg -3'
miRNA:   3'- cuGC-GUAGCC--AGCUGUUGGG-------CGuUGG- -5'
19722 3' -54.1 NC_004686.1 + 52141 0.68 0.664558
Target:  5'- -cCGCAcaGGUCGACAAguggugcgacaagauCaCCGCAACCc -3'
miRNA:   3'- cuGCGUagCCAGCUGUU---------------G-GGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 53818 0.68 0.660179
Target:  5'- --aGCAUCGG--GACGAaaCGCAACCa -3'
miRNA:   3'- cugCGUAGCCagCUGUUggGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 12333 0.68 0.660179
Target:  5'- -cCGCAagGGgCGGCuauGCCgGCGGCCa -3'
miRNA:   3'- cuGCGUagCCaGCUGu--UGGgCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 24270 0.68 0.660179
Target:  5'- gGACGCccaaccCGGUaugugCGACAACCaCGgAACCg -3'
miRNA:   3'- -CUGCGua----GCCA-----GCUGUUGG-GCgUUGG- -5'
19722 3' -54.1 NC_004686.1 + 22782 0.69 0.649215
Target:  5'- cGGCGCGUaucUGGUCGAgGAUUCGUuGCUg -3'
miRNA:   3'- -CUGCGUA---GCCAGCUgUUGGGCGuUGG- -5'
19722 3' -54.1 NC_004686.1 + 51971 0.69 0.638236
Target:  5'- cGACGCc---GUCGACAucAUCCGCGACa -3'
miRNA:   3'- -CUGCGuagcCAGCUGU--UGGGCGUUGg -5'
19722 3' -54.1 NC_004686.1 + 30746 0.69 0.638236
Target:  5'- gGACGCGgaGGUCGGCGACaagGCuuGCCg -3'
miRNA:   3'- -CUGCGUagCCAGCUGUUGgg-CGu-UGG- -5'
19722 3' -54.1 NC_004686.1 + 6318 0.69 0.627251
Target:  5'- --aGCAUucgCGGUCGACAccgugGCCUGCGggaauuACCa -3'
miRNA:   3'- cugCGUA---GCCAGCUGU-----UGGGCGU------UGG- -5'
19722 3' -54.1 NC_004686.1 + 22126 0.69 0.627251
Target:  5'- uGGCGCGcgCGGccUCGGCGGCaCCGCugucaucACCg -3'
miRNA:   3'- -CUGCGUa-GCC--AGCUGUUG-GGCGu------UGG- -5'
19722 3' -54.1 NC_004686.1 + 45525 0.69 0.627251
Target:  5'- cACGUAcaugCGGUUGcGCAGCCUgauaGCAGCCa -3'
miRNA:   3'- cUGCGUa---GCCAGC-UGUUGGG----CGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 19078 0.69 0.627251
Target:  5'- uGGCGCAguUCGGUgagggCGGCuGGCCCGguaAGCCg -3'
miRNA:   3'- -CUGCGU--AGCCA-----GCUG-UUGGGCg--UUGG- -5'
19722 3' -54.1 NC_004686.1 + 8535 0.69 0.615173
Target:  5'- aACGCAuucaccuUCGGcCGcACAaacACCCGCGGCUc -3'
miRNA:   3'- cUGCGU-------AGCCaGC-UGU---UGGGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.