miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19723 5' -54.8 NC_004686.1 + 2874 0.66 0.771647
Target:  5'- cGGagCUGGcccguucgcgugGCCGCAUCGAaucGGUgACCc -3'
miRNA:   3'- aCUagGACC------------UGGCGUAGCU---UCGgUGG- -5'
19723 5' -54.8 NC_004686.1 + 47318 0.66 0.761484
Target:  5'- cGAcCCgUGGuuuCCGCAgcCGAAccgcGCCACCg -3'
miRNA:   3'- aCUaGG-ACCu--GGCGUa-GCUU----CGGUGG- -5'
19723 5' -54.8 NC_004686.1 + 53665 0.66 0.75119
Target:  5'- gGAacgCC-GGACCgugcuGCAUCGcAGCCACa -3'
miRNA:   3'- aCUa--GGaCCUGG-----CGUAGCuUCGGUGg -5'
19723 5' -54.8 NC_004686.1 + 56142 0.66 0.75119
Target:  5'- cGAUCCcGGAUCGuCGUgGAAGCgaACg -3'
miRNA:   3'- aCUAGGaCCUGGC-GUAgCUUCGg-UGg -5'
19723 5' -54.8 NC_004686.1 + 55134 0.66 0.75119
Target:  5'- gGGUgCUGGGCaCGCAUCuucGGCCGa- -3'
miRNA:   3'- aCUAgGACCUG-GCGUAGcu-UCGGUgg -5'
19723 5' -54.8 NC_004686.1 + 49320 0.66 0.740773
Target:  5'- ----gUUGGuCCGUuUUGGAGCCACCc -3'
miRNA:   3'- acuagGACCuGGCGuAGCUUCGGUGG- -5'
19723 5' -54.8 NC_004686.1 + 3711 0.66 0.740773
Target:  5'- cGAUgUguUGGAgaCGUGgagCGAAGCCGCCa -3'
miRNA:   3'- aCUAgG--ACCUg-GCGUa--GCUUCGGUGG- -5'
19723 5' -54.8 NC_004686.1 + 55197 0.66 0.730248
Target:  5'- -aAUCCgcaaGGACCGCAaguccaUCGgcGCCGUCa -3'
miRNA:   3'- acUAGGa---CCUGGCGU------AGCuuCGGUGG- -5'
19723 5' -54.8 NC_004686.1 + 14508 0.66 0.730248
Target:  5'- cGAUCC-GGAgCCGUGgcgCGgcGCCaACCu -3'
miRNA:   3'- aCUAGGaCCU-GGCGUa--GCuuCGG-UGG- -5'
19723 5' -54.8 NC_004686.1 + 1010 0.66 0.719624
Target:  5'- cGGUCCUugcGGAUUugguggGCGUCGGcGGCUGCCg -3'
miRNA:   3'- aCUAGGA---CCUGG------CGUAGCU-UCGGUGG- -5'
19723 5' -54.8 NC_004686.1 + 17368 0.67 0.708913
Target:  5'- aGAUCUUgcGGGCgGCGUCGuugacguAGUgGCCg -3'
miRNA:   3'- aCUAGGA--CCUGgCGUAGCu------UCGgUGG- -5'
19723 5' -54.8 NC_004686.1 + 44760 0.67 0.705685
Target:  5'- cGGUCauaUGGGugcuuccaaaugucCCGCAUacCGGgcGGCCACCa -3'
miRNA:   3'- aCUAGg--ACCU--------------GGCGUA--GCU--UCGGUGG- -5'
19723 5' -54.8 NC_004686.1 + 32306 0.67 0.698127
Target:  5'- uUGAcgCCUGGAUgGC-UCGAcguAGCUaaGCCa -3'
miRNA:   3'- -ACUa-GGACCUGgCGuAGCU---UCGG--UGG- -5'
19723 5' -54.8 NC_004686.1 + 13611 0.67 0.698127
Target:  5'- cGGUCUUcGGAUCGCAcUUGAGGaugucgaaCACCa -3'
miRNA:   3'- aCUAGGA-CCUGGCGU-AGCUUCg-------GUGG- -5'
19723 5' -54.8 NC_004686.1 + 4944 0.67 0.698127
Target:  5'- gUGAcauUCC-GGGCCGCuuagccguUCGuGGCUGCCg -3'
miRNA:   3'- -ACU---AGGaCCUGGCGu-------AGCuUCGGUGG- -5'
19723 5' -54.8 NC_004686.1 + 14908 0.67 0.687277
Target:  5'- gGGUCCuUGGGCgGCAcggUCGAcacccuacucaAGCC-CCu -3'
miRNA:   3'- aCUAGG-ACCUGgCGU---AGCU-----------UCGGuGG- -5'
19723 5' -54.8 NC_004686.1 + 22184 0.67 0.687277
Target:  5'- ---cCCUGcugauuGACgGCAUCaAGGCCGCCa -3'
miRNA:   3'- acuaGGAC------CUGgCGUAGcUUCGGUGG- -5'
19723 5' -54.8 NC_004686.1 + 2903 0.67 0.676374
Target:  5'- gUGAa-CUGGcCCGCcgCGAAGgCCACa -3'
miRNA:   3'- -ACUagGACCuGGCGuaGCUUC-GGUGg -5'
19723 5' -54.8 NC_004686.1 + 11909 0.67 0.66543
Target:  5'- --cUCCUGGGCCG-GUCGguGCCGgUg -3'
miRNA:   3'- acuAGGACCUGGCgUAGCuuCGGUgG- -5'
19723 5' -54.8 NC_004686.1 + 43746 0.67 0.66543
Target:  5'- ---aCCUGGGCCGCcgC---GCCAUCg -3'
miRNA:   3'- acuaGGACCUGGCGuaGcuuCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.