miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19724 3' -54.4 NC_004686.1 + 52762 0.65 0.767612
Target:  5'- gGCAccGCCGCcAACUGCuucauacccgcauCAGCcuGCGCCg -3'
miRNA:   3'- -CGU--CGGUGuUUGGCGu------------GUCGu-CGUGG- -5'
19724 3' -54.4 NC_004686.1 + 47332 0.66 0.761419
Target:  5'- cGCAGCCG--AACCGCGCcaccgucgaGGCGuGgGCUg -3'
miRNA:   3'- -CGUCGGUguUUGGCGUG---------UCGU-CgUGG- -5'
19724 3' -54.4 NC_004686.1 + 22514 0.66 0.761419
Target:  5'- gGCAGCCugAAgugGaaGCGacGCAGCACg -3'
miRNA:   3'- -CGUCGGugUU---UggCGUguCGUCGUGg -5'
19724 3' -54.4 NC_004686.1 + 37569 0.66 0.755176
Target:  5'- aGCAGCgACAccagguucggugaguGAugcacCCGCACAcGC-GCACCc -3'
miRNA:   3'- -CGUCGgUGU---------------UU-----GGCGUGU-CGuCGUGG- -5'
19724 3' -54.4 NC_004686.1 + 37359 0.66 0.750988
Target:  5'- uGCGGaggaACucGCCGCGaugaGGCAGCAgCg -3'
miRNA:   3'- -CGUCgg--UGuuUGGCGUg---UCGUCGUgG- -5'
19724 3' -54.4 NC_004686.1 + 32022 0.66 0.749939
Target:  5'- uGCGGCCACAcgGccacaccccauccACCGCuuucccACAGCcauGCGCa -3'
miRNA:   3'- -CGUCGGUGU--U-------------UGGCG------UGUCGu--CGUGg -5'
19724 3' -54.4 NC_004686.1 + 33720 0.66 0.740434
Target:  5'- -uGGCCGaugaGAGCCaGCAgAGCAGC-CUu -3'
miRNA:   3'- cgUCGGUg---UUUGG-CGUgUCGUCGuGG- -5'
19724 3' -54.4 NC_004686.1 + 22647 0.66 0.740434
Target:  5'- cCAGCCcaacauucgGCAGGcCCGCAUcaucgaaccGGCGGCAgCg -3'
miRNA:   3'- cGUCGG---------UGUUU-GGCGUG---------UCGUCGUgG- -5'
19724 3' -54.4 NC_004686.1 + 48987 0.66 0.740434
Target:  5'- -gGGCgACGuuguaGAgCGCGCgaaAGCAGCACUg -3'
miRNA:   3'- cgUCGgUGU-----UUgGCGUG---UCGUCGUGG- -5'
19724 3' -54.4 NC_004686.1 + 17113 0.66 0.740434
Target:  5'- -aAGgCACuGACCGCAguGCAuuCGCCg -3'
miRNA:   3'- cgUCgGUGuUUGGCGUguCGUc-GUGG- -5'
19724 3' -54.4 NC_004686.1 + 42525 0.66 0.740434
Target:  5'- cGCGGCUgaAUcAACUGCACAGU--CACCc -3'
miRNA:   3'- -CGUCGG--UGuUUGGCGUGUCGucGUGG- -5'
19724 3' -54.4 NC_004686.1 + 3529 0.66 0.740434
Target:  5'- -uGGCCgACAAacGCCGCguucagggccGCGGCAcGCugCa -3'
miRNA:   3'- cgUCGG-UGUU--UGGCG----------UGUCGU-CGugG- -5'
19724 3' -54.4 NC_004686.1 + 55176 0.66 0.739372
Target:  5'- gGCAGCCGCcgacgcccAccaaauccgcaagGACCGCAagucCAuCGGCGCCg -3'
miRNA:   3'- -CGUCGGUG--------U-------------UUGGCGU----GUcGUCGUGG- -5'
19724 3' -54.4 NC_004686.1 + 4821 0.66 0.739372
Target:  5'- cCAGCCGC-AAUCGCACucggcguagaacuGGCuGC-CCa -3'
miRNA:   3'- cGUCGGUGuUUGGCGUG-------------UCGuCGuGG- -5'
19724 3' -54.4 NC_004686.1 + 15730 0.66 0.739372
Target:  5'- --cGCCGCcuGCCgGCACgaaucagAGCAGUACUu -3'
miRNA:   3'- cguCGGUGuuUGG-CGUG-------UCGUCGUGG- -5'
19724 3' -54.4 NC_004686.1 + 22560 0.66 0.729767
Target:  5'- cGCAGCCGCccucACCauCAcCGGCGGCcaGCCc -3'
miRNA:   3'- -CGUCGGUGuu--UGGc-GU-GUCGUCG--UGG- -5'
19724 3' -54.4 NC_004686.1 + 2711 0.66 0.729767
Target:  5'- -uGGCCcuguauuuggACAAugagacggucACCGCGCAGCGGgACa -3'
miRNA:   3'- cgUCGG----------UGUU----------UGGCGUGUCGUCgUGg -5'
19724 3' -54.4 NC_004686.1 + 53108 0.66 0.729767
Target:  5'- cGCGGCggggaacugcuuCACAu-CCGCACGGgcaAGCugCg -3'
miRNA:   3'- -CGUCG------------GUGUuuGGCGUGUCg--UCGugG- -5'
19724 3' -54.4 NC_004686.1 + 17334 0.66 0.729767
Target:  5'- uGCAGgCACugcGGCUGCACGG-GGCAUUc -3'
miRNA:   3'- -CGUCgGUGu--UUGGCGUGUCgUCGUGG- -5'
19724 3' -54.4 NC_004686.1 + 46411 0.66 0.729767
Target:  5'- cCGGCgGC-GACCGCAgUGGCGGCAgUg -3'
miRNA:   3'- cGUCGgUGuUUGGCGU-GUCGUCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.