Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19724 | 5' | -54.3 | NC_004686.1 | + | 17243 | 0.67 | 0.70067 |
|
Target: 5'- gAGGaucUGCGGgaggGCGUcGaGUUCACCCGUg -3' miRNA: 3'- gUCC---ACGUCa---UGUA-C-CAAGUGGGCGa -5' |
|||||||
| 19724 | 5' | -54.3 | NC_004686.1 | + | 10262 | 0.67 | 0.689661 |
|
Target: 5'- aUAGGcauUGCGuGUACcgGGUcaugUCAUCCGCa -3' miRNA: 3'- -GUCC---ACGU-CAUGuaCCA----AGUGGGCGa -5' |
|||||||
| 19724 | 5' | -54.3 | NC_004686.1 | + | 5268 | 0.68 | 0.645168 |
|
Target: 5'- -cGGUGCGGcucUGUcgGGUUCGCCgGCg -3' miRNA: 3'- guCCACGUC---AUGuaCCAAGUGGgCGa -5' |
|||||||
| 19724 | 5' | -54.3 | NC_004686.1 | + | 39230 | 0.68 | 0.633987 |
|
Target: 5'- gAGGUGgAGaaggugGCGUGGcUgACCCGCa -3' miRNA: 3'- gUCCACgUCa-----UGUACCaAgUGGGCGa -5' |
|||||||
| 19724 | 5' | -54.3 | NC_004686.1 | + | 31727 | 0.68 | 0.632869 |
|
Target: 5'- cCAGGUGuCGGUggucucgACAUGGUggCGgCCGCc -3' miRNA: 3'- -GUCCAC-GUCA-------UGUACCAa-GUgGGCGa -5' |
|||||||
| 19724 | 5' | -54.3 | NC_004686.1 | + | 37233 | 0.73 | 0.357442 |
|
Target: 5'- -cGGcGCGG-GCAUGGUUCcCCCGCUc -3' miRNA: 3'- guCCaCGUCaUGUACCAAGuGGGCGA- -5' |
|||||||
| 19724 | 5' | -54.3 | NC_004686.1 | + | 53253 | 1.08 | 0.001329 |
|
Target: 5'- gCAGGUGCAGUACAUGGUUCACCCGCUg -3' miRNA: 3'- -GUCCACGUCAUGUACCAAGUGGGCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home