miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19725 3' -56.8 NC_004686.1 + 1111 0.66 0.615612
Target:  5'- -cGGCAC-CACCaaacCCGGGGcGGACAc -3'
miRNA:   3'- guCCGUGuGUGGac--GGUCCCaCUUGU- -5'
19725 3' -56.8 NC_004686.1 + 261 0.66 0.615612
Target:  5'- gAGGCugACGCguuggacaaUUGUCAGGGUGugugucGGCAg -3'
miRNA:   3'- gUCCGugUGUG---------GACGGUCCCAC------UUGU- -5'
19725 3' -56.8 NC_004686.1 + 26271 0.66 0.593611
Target:  5'- gGGGUgugcugGCACGCCgGCCAGGGa----- -3'
miRNA:   3'- gUCCG------UGUGUGGaCGGUCCCacuugu -5'
19725 3' -56.8 NC_004686.1 + 52192 0.66 0.57174
Target:  5'- --uGCACGCACCggGCC-GGGUGcGCc -3'
miRNA:   3'- gucCGUGUGUGGa-CGGuCCCACuUGu -5'
19725 3' -56.8 NC_004686.1 + 33605 0.67 0.539325
Target:  5'- gCGGGCACGCuucCCggaccCCAGGGgcgcGAACGu -3'
miRNA:   3'- -GUCCGUGUGu--GGac---GGUCCCa---CUUGU- -5'
19725 3' -56.8 NC_004686.1 + 18641 0.67 0.539325
Target:  5'- -uGGUGuCGCugCUGCCuccGGGUGAcACAa -3'
miRNA:   3'- guCCGU-GUGugGACGGu--CCCACU-UGU- -5'
19725 3' -56.8 NC_004686.1 + 3835 0.68 0.497143
Target:  5'- gGGGCcuACGCGCUgGCC-GGGUGggUg -3'
miRNA:   3'- gUCCG--UGUGUGGaCGGuCCCACuuGu -5'
19725 3' -56.8 NC_004686.1 + 24758 0.68 0.497143
Target:  5'- -cGGC-UACGCCUGCCAGacaGGUGcACu -3'
miRNA:   3'- guCCGuGUGUGGACGGUC---CCACuUGu -5'
19725 3' -56.8 NC_004686.1 + 172 0.69 0.446628
Target:  5'- cCGGGUugGCGggUGCCGggcGGGUGGGCGa -3'
miRNA:   3'- -GUCCGugUGUggACGGU---CCCACUUGU- -5'
19725 3' -56.8 NC_004686.1 + 36295 0.69 0.424368
Target:  5'- cCAGGCGCGCACUcucgUGCCcgagcuggucgccgAGGuUGAGCGg -3'
miRNA:   3'- -GUCCGUGUGUGG----ACGG--------------UCCcACUUGU- -5'
19725 3' -56.8 NC_004686.1 + 55397 0.7 0.363491
Target:  5'- gAGGCGCACACCUGaCCGccGcGGACAa -3'
miRNA:   3'- gUCCGUGUGUGGAC-GGUccCaCUUGU- -5'
19725 3' -56.8 NC_004686.1 + 39465 0.72 0.291706
Target:  5'- -cGGCGCAUuuCCgcgGCCAGGGUuGGACu -3'
miRNA:   3'- guCCGUGUGu-GGa--CGGUCCCA-CUUGu -5'
19725 3' -56.8 NC_004686.1 + 52694 0.74 0.219627
Target:  5'- -uGGCccgACGCGCCUGCUGGGGUGu-CAa -3'
miRNA:   3'- guCCG---UGUGUGGACGGUCCCACuuGU- -5'
19725 3' -56.8 NC_004686.1 + 53472 1.08 0.000694
Target:  5'- gCAGGCACACACCUGCCAGGGUGAACAa -3'
miRNA:   3'- -GUCCGUGUGUGGACGGUCCCACUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.