miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19725 5' -57.2 NC_004686.1 + 26250 0.66 0.66618
Target:  5'- aCCGUCACaauCGUGGCu-GUcGGggUGUg -3'
miRNA:   3'- gGGCAGUG---GCGCCGuuCGuCCuuGCG- -5'
19725 5' -57.2 NC_004686.1 + 37726 0.66 0.66618
Target:  5'- aCCGg-ACCGgGGCGucguGGAGCGCc -3'
miRNA:   3'- gGGCagUGGCgCCGUucguCCUUGCG- -5'
19725 5' -57.2 NC_004686.1 + 16460 0.66 0.66618
Target:  5'- nCCGUCGUCGa-GCAGGCGGGc-CGCc -3'
miRNA:   3'- gGGCAGUGGCgcCGUUCGUCCuuGCG- -5'
19725 5' -57.2 NC_004686.1 + 44094 0.66 0.66618
Target:  5'- gCCGaaGCCGCGGUAgccgcAGCAGaAGcCGCc -3'
miRNA:   3'- gGGCagUGGCGCCGU-----UCGUCcUU-GCG- -5'
19725 5' -57.2 NC_004686.1 + 48139 0.66 0.662971
Target:  5'- cCCCGUCGaccaCGCGGacCAcgaacgacuuccgcGGCAGcGGCGCc -3'
miRNA:   3'- -GGGCAGUg---GCGCC--GU--------------UCGUCcUUGCG- -5'
19725 5' -57.2 NC_004686.1 + 26508 0.66 0.655473
Target:  5'- gCCGgugCugCGCaaGGCAAGUGGGAucCGg -3'
miRNA:   3'- gGGCa--GugGCG--CCGUUCGUCCUu-GCg -5'
19725 5' -57.2 NC_004686.1 + 17028 0.66 0.644746
Target:  5'- cUCUG-CGcCCGuCGGCAcucauucgAGCAGGucuGCGCa -3'
miRNA:   3'- -GGGCaGU-GGC-GCCGU--------UCGUCCu--UGCG- -5'
19725 5' -57.2 NC_004686.1 + 8506 0.66 0.634008
Target:  5'- gCCGcguugCGCCGauuCAAGCAGG-ACGCg -3'
miRNA:   3'- gGGCa----GUGGCgccGUUCGUCCuUGCG- -5'
19725 5' -57.2 NC_004686.1 + 2913 0.66 0.632934
Target:  5'- cCCCGUaCACgGCGGUAguuguuaccggucAGCGGGugaaccAUGUa -3'
miRNA:   3'- -GGGCA-GUGgCGCCGU-------------UCGUCCu-----UGCG- -5'
19725 5' -57.2 NC_004686.1 + 31689 0.66 0.623268
Target:  5'- aCCGUCGCCGCcGUAuGCcgcgccGAAUGCa -3'
miRNA:   3'- gGGCAGUGGCGcCGUuCGuc----CUUGCG- -5'
19725 5' -57.2 NC_004686.1 + 51368 0.66 0.622194
Target:  5'- aCCGcCGCCGCugaagaaGGUccGCGcGAACGCg -3'
miRNA:   3'- gGGCaGUGGCG-------CCGuuCGUcCUUGCG- -5'
19725 5' -57.2 NC_004686.1 + 47287 0.67 0.601819
Target:  5'- aUgGUCcauCCGCgGGCGAGgAGGucgGCGCg -3'
miRNA:   3'- gGgCAGu--GGCG-CCGUUCgUCCu--UGCG- -5'
19725 5' -57.2 NC_004686.1 + 38865 0.67 0.601819
Target:  5'- cCCCGUgcaGCCGCaGuGCcuGCAGuGGGCGUu -3'
miRNA:   3'- -GGGCAg--UGGCG-C-CGuuCGUC-CUUGCG- -5'
19725 5' -57.2 NC_004686.1 + 29585 0.67 0.591128
Target:  5'- gCCCGg-GCUGCGGUucgaucGGCGGGugcuCGCc -3'
miRNA:   3'- -GGGCagUGGCGCCGu-----UCGUCCuu--GCG- -5'
19725 5' -57.2 NC_004686.1 + 28282 0.67 0.591128
Target:  5'- aCCGUcCACaCGCGGUGucucaucguucGGguGuGGACGCu -3'
miRNA:   3'- gGGCA-GUG-GCGCCGU-----------UCguC-CUUGCG- -5'
19725 5' -57.2 NC_004686.1 + 17964 0.67 0.591128
Target:  5'- uCUgGUCACUGaaaCGGCcacGGguGGAACGUu -3'
miRNA:   3'- -GGgCAGUGGC---GCCGu--UCguCCUUGCG- -5'
19725 5' -57.2 NC_004686.1 + 29720 0.67 0.584728
Target:  5'- cCuuGUgGCCgaugacgcggGUGGCAGGCAGuuccaguuucagagcGAGCGCa -3'
miRNA:   3'- -GggCAgUGG----------CGCCGUUCGUC---------------CUUGCG- -5'
19725 5' -57.2 NC_004686.1 + 896 0.67 0.580469
Target:  5'- cCCUGagcaUugCGCGGCAGGCcGGcaaAACGUg -3'
miRNA:   3'- -GGGCa---GugGCGCCGUUCGuCC---UUGCG- -5'
19725 5' -57.2 NC_004686.1 + 34966 0.67 0.580469
Target:  5'- aUCCGUaCGCCGUGGCc--CAGGcacCGCu -3'
miRNA:   3'- -GGGCA-GUGGCGCCGuucGUCCuu-GCG- -5'
19725 5' -57.2 NC_004686.1 + 33593 0.67 0.580469
Target:  5'- gCCCG-CACCcuuGCgGGCAcGCuucccggaccccAGGGGCGCg -3'
miRNA:   3'- -GGGCaGUGG---CG-CCGUuCG------------UCCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.