miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19726 3' -52.6 NC_004686.1 + 27410 0.66 0.852955
Target:  5'- cCAACAAcACcgCGGCGacaCCCGCCGCAu -3'
miRNA:   3'- -GUUGUU-UGa-GUUGUgcgGGGCGGUGU- -5'
19726 3' -52.6 NC_004686.1 + 22827 0.66 0.85209
Target:  5'- -uGCAGGCUCAACAggaGCCUccaguguCGCCAa- -3'
miRNA:   3'- guUGUUUGAGUUGUg--CGGG-------GCGGUgu -5'
19726 3' -52.6 NC_004686.1 + 767 0.66 0.844197
Target:  5'- aCAACGAACUgAuCGCGCCUgaGCUGCc -3'
miRNA:   3'- -GUUGUUUGAgUuGUGCGGGg-CGGUGu -5'
19726 3' -52.6 NC_004686.1 + 36299 0.66 0.844197
Target:  5'- -uACAAGC-CGACACcagGCCCCGCaC-CAu -3'
miRNA:   3'- guUGUUUGaGUUGUG---CGGGGCG-GuGU- -5'
19726 3' -52.6 NC_004686.1 + 31734 0.66 0.843308
Target:  5'- uCggUGGuCUCGACAUgguggcgGCCgCCGCCGCAg -3'
miRNA:   3'- -GuuGUUuGAGUUGUG-------CGG-GGCGGUGU- -5'
19726 3' -52.6 NC_004686.1 + 15961 0.66 0.835205
Target:  5'- uGACuGGCUCGGCACGCCaUCGa-GCAg -3'
miRNA:   3'- gUUGuUUGAGUUGUGCGG-GGCggUGU- -5'
19726 3' -52.6 NC_004686.1 + 52340 0.66 0.835205
Target:  5'- gGGCAGuUUCAACG-GUUCCGCCACc -3'
miRNA:   3'- gUUGUUuGAGUUGUgCGGGGCGGUGu -5'
19726 3' -52.6 NC_004686.1 + 30921 0.66 0.825988
Target:  5'- -cGCAGACUUcu--CGUCuCCGCCACAc -3'
miRNA:   3'- guUGUUUGAGuuguGCGG-GGCGGUGU- -5'
19726 3' -52.6 NC_004686.1 + 16834 0.66 0.825988
Target:  5'- --cCGAACUCGugGCGCC--GCUACAa -3'
miRNA:   3'- guuGUUUGAGUugUGCGGggCGGUGU- -5'
19726 3' -52.6 NC_004686.1 + 51315 0.66 0.825988
Target:  5'- aCGACcgGGGC-CAAagaaGCCCCGCCACc -3'
miRNA:   3'- -GUUG--UUUGaGUUgug-CGGGGCGGUGu -5'
19726 3' -52.6 NC_004686.1 + 14820 0.66 0.816558
Target:  5'- gGGCGGGCaCAGCAUGCCUgGCguCAa -3'
miRNA:   3'- gUUGUUUGaGUUGUGCGGGgCGguGU- -5'
19726 3' -52.6 NC_004686.1 + 38062 0.66 0.816558
Target:  5'- aAACGggUUCAGaauCGCCCCGaccgugccCCGCAa -3'
miRNA:   3'- gUUGUuuGAGUUgu-GCGGGGC--------GGUGU- -5'
19726 3' -52.6 NC_004686.1 + 46924 0.66 0.816558
Target:  5'- uCAAuCGAACUCGucaACAaGCCCUcgaaGCCGCAa -3'
miRNA:   3'- -GUU-GUUUGAGU---UGUgCGGGG----CGGUGU- -5'
19726 3' -52.6 NC_004686.1 + 24347 0.67 0.806925
Target:  5'- gCGGCGGACaaGGCGCcguguggaGCCCCGUCAUg -3'
miRNA:   3'- -GUUGUUUGagUUGUG--------CGGGGCGGUGu -5'
19726 3' -52.6 NC_004686.1 + 27606 0.67 0.806925
Target:  5'- gCAGCAGAa-CGAUGCGCCUgaGCCACc -3'
miRNA:   3'- -GUUGUUUgaGUUGUGCGGGg-CGGUGu -5'
19726 3' -52.6 NC_004686.1 + 9355 0.67 0.797099
Target:  5'- aGGCGGAgUCG--GCGUCCCGCCGu- -3'
miRNA:   3'- gUUGUUUgAGUugUGCGGGGCGGUgu -5'
19726 3' -52.6 NC_004686.1 + 34276 0.67 0.797099
Target:  5'- uCGACGGgaaUCAACACGUCgauauaggcaCCGCCACc -3'
miRNA:   3'- -GUUGUUug-AGUUGUGCGG----------GGCGGUGu -5'
19726 3' -52.6 NC_004686.1 + 55695 0.67 0.797099
Target:  5'- aAGCAGACggUAACgaaucuGCGCCuCCGCCAg- -3'
miRNA:   3'- gUUGUUUGa-GUUG------UGCGG-GGCGGUgu -5'
19726 3' -52.6 NC_004686.1 + 54268 0.67 0.797099
Target:  5'- uCAAcCAAACUCAgccacaACGCGUUCC-CCGCAc -3'
miRNA:   3'- -GUU-GUUUGAGU------UGUGCGGGGcGGUGU- -5'
19726 3' -52.6 NC_004686.1 + 27573 0.67 0.776917
Target:  5'- uCAGCAGACUgCAcCACcucaGCCuCCGCCAa- -3'
miRNA:   3'- -GUUGUUUGA-GUuGUG----CGG-GGCGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.