miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19726 5' -56 NC_004686.1 + 28794 0.66 0.663527
Target:  5'- gUCGCCGCGGUGUUGU--UGGUGUUc -3'
miRNA:   3'- aAGCGGCGCUGUAGCGcaACCGCAAc -5'
19726 5' -56 NC_004686.1 + 1296 0.67 0.608499
Target:  5'- -aCGCCGCcGCGccCGCaGgaagUGGCGUUGg -3'
miRNA:   3'- aaGCGGCGcUGUa-GCG-Ca---ACCGCAAC- -5'
19726 5' -56 NC_004686.1 + 42387 0.67 0.586563
Target:  5'- cUUCGUCGCGcaGCAUCuGCucUUGGCGUUu -3'
miRNA:   3'- -AAGCGGCGC--UGUAG-CGc-AACCGCAAc -5'
19726 5' -56 NC_004686.1 + 47726 0.68 0.511404
Target:  5'- cUCGuuGUGugGUUGCGgggacgagugUGGUGUUGc -3'
miRNA:   3'- aAGCggCGCugUAGCGCa---------ACCGCAAC- -5'
19726 5' -56 NC_004686.1 + 16845 0.69 0.480392
Target:  5'- -gCGCCGCuACAacaccaccagugUUGCGUUGGCGg-- -3'
miRNA:   3'- aaGCGGCGcUGU------------AGCGCAACCGCaac -5'
19726 5' -56 NC_004686.1 + 46351 0.69 0.460235
Target:  5'- aUCGCCGCGGCGUCcGCGacaUUGGaCa--- -3'
miRNA:   3'- aAGCGGCGCUGUAG-CGC---AACC-Gcaac -5'
19726 5' -56 NC_004686.1 + 22751 0.7 0.450326
Target:  5'- -gCGCCGCGGCuAUCGCGgucaccGGUGg-- -3'
miRNA:   3'- aaGCGGCGCUG-UAGCGCaa----CCGCaac -5'
19726 5' -56 NC_004686.1 + 6319 0.7 0.450326
Target:  5'- uUUCGCCGCGGCcuucGUCGCc--GGCGa-- -3'
miRNA:   3'- -AAGCGGCGCUG----UAGCGcaaCCGCaac -5'
19726 5' -56 NC_004686.1 + 27733 0.7 0.420376
Target:  5'- gUCGgCGaagggcuCGGCAUCGUGaUGGCGUUGu -3'
miRNA:   3'- aAGCgGC-------GCUGUAGCGCaACCGCAAC- -5'
19726 5' -56 NC_004686.1 + 32392 0.71 0.358256
Target:  5'- cUCGCCGCGGCcgAUCGCGgugugcauacGGCGa-- -3'
miRNA:   3'- aAGCGGCGCUG--UAGCGCaa--------CCGCaac -5'
19726 5' -56 NC_004686.1 + 50840 0.72 0.333326
Target:  5'- -aCGCCGaCGACGUCGaaucCGUgugGGUGUUGu -3'
miRNA:   3'- aaGCGGC-GCUGUAGC----GCAa--CCGCAAC- -5'
19726 5' -56 NC_004686.1 + 16434 0.73 0.280198
Target:  5'- gUCGCCGCGGCGUCcGUGUaggaGGCGc-- -3'
miRNA:   3'- aAGCGGCGCUGUAG-CGCAa---CCGCaac -5'
19726 5' -56 NC_004686.1 + 1248 0.76 0.183729
Target:  5'- cUCGCUGCGAUgaacgugucugagAUCGgGUUGGCGUUc -3'
miRNA:   3'- aAGCGGCGCUG-------------UAGCgCAACCGCAAc -5'
19726 5' -56 NC_004686.1 + 54069 1.05 0.001544
Target:  5'- gUUCGCCGCGACAUCGCGUUGGCGUUGc -3'
miRNA:   3'- -AAGCGGCGCUGUAGCGCAACCGCAAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.