miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19727 5' -54.5 NC_004686.1 + 50089 0.66 0.761463
Target:  5'- cGCCAacugguCGUCAGaagGGUcgGCgGCCAGgcaugGCGCg -3'
miRNA:   3'- -CGGU------GUAGUCa--CCG--UG-CGGUCa----UGCG- -5'
19727 5' -54.5 NC_004686.1 + 50861 0.66 0.751123
Target:  5'- aGCCAgGUCGggcGUGGCugaggUGCCGGUGgucaGCu -3'
miRNA:   3'- -CGGUgUAGU---CACCGu----GCGGUCAUg---CG- -5'
19727 5' -54.5 NC_004686.1 + 36904 0.66 0.740661
Target:  5'- cGUCGgAUCcggAGUGGCugGCgAcgagguucucgaGUACGCa -3'
miRNA:   3'- -CGGUgUAG---UCACCGugCGgU------------CAUGCG- -5'
19727 5' -54.5 NC_004686.1 + 11409 0.66 0.740661
Target:  5'- uCCGgAgUGGUGGC-CGcCCGGUAUGCg -3'
miRNA:   3'- cGGUgUaGUCACCGuGC-GGUCAUGCG- -5'
19727 5' -54.5 NC_004686.1 + 4783 0.66 0.740661
Target:  5'- cCCGCAUcCAGUuGCACGUCAu--CGCg -3'
miRNA:   3'- cGGUGUA-GUCAcCGUGCGGUcauGCG- -5'
19727 5' -54.5 NC_004686.1 + 26681 0.66 0.730089
Target:  5'- -gCGCAuUCAGUGGC-C-CCAGUugGg -3'
miRNA:   3'- cgGUGU-AGUCACCGuGcGGUCAugCg -5'
19727 5' -54.5 NC_004686.1 + 22116 0.67 0.719418
Target:  5'- cGUCGag-CAGUGGCGCGCgCGGccucgGCGg -3'
miRNA:   3'- -CGGUguaGUCACCGUGCG-GUCa----UGCg -5'
19727 5' -54.5 NC_004686.1 + 6255 0.67 0.708659
Target:  5'- cCCGCAUgGGagaUGGUuuuCGCCAGcACGUg -3'
miRNA:   3'- cGGUGUAgUC---ACCGu--GCGGUCaUGCG- -5'
19727 5' -54.5 NC_004686.1 + 52467 0.67 0.686927
Target:  5'- uGCCACAauagCGGUGGCAC-CacaAGUgucuucagaGCGCc -3'
miRNA:   3'- -CGGUGUa---GUCACCGUGcGg--UCA---------UGCG- -5'
19727 5' -54.5 NC_004686.1 + 44408 0.67 0.686927
Target:  5'- uCCACGUUGGUcgcGGCACGCaacuugGGU-CGCa -3'
miRNA:   3'- cGGUGUAGUCA---CCGUGCGg-----UCAuGCG- -5'
19727 5' -54.5 NC_004686.1 + 49081 0.67 0.675976
Target:  5'- cGCCAgCGUCcuuGUGGC-CGCC-GUGCa- -3'
miRNA:   3'- -CGGU-GUAGu--CACCGuGCGGuCAUGcg -5'
19727 5' -54.5 NC_004686.1 + 19880 0.68 0.664982
Target:  5'- aGCCGCucaaccUCGGcgaccagcucgGGCACGagAGUGCGCg -3'
miRNA:   3'- -CGGUGu-----AGUCa----------CCGUGCggUCAUGCG- -5'
19727 5' -54.5 NC_004686.1 + 40626 0.68 0.653958
Target:  5'- cGCCACGUucgacCAG-GGCG-GCCGGgaACGCu -3'
miRNA:   3'- -CGGUGUA-----GUCaCCGUgCGGUCa-UGCG- -5'
19727 5' -54.5 NC_004686.1 + 14422 0.68 0.653958
Target:  5'- aGCCGCuggCAGaacUGGCACGaCAugGCGCa -3'
miRNA:   3'- -CGGUGua-GUC---ACCGUGCgGUcaUGCG- -5'
19727 5' -54.5 NC_004686.1 + 42420 0.68 0.642914
Target:  5'- -gCGCGagcGUGGCACGCCAGauCGCc -3'
miRNA:   3'- cgGUGUaguCACCGUGCGGUCauGCG- -5'
19727 5' -54.5 NC_004686.1 + 46416 0.68 0.642914
Target:  5'- gGCgACcgCAGUGGCG-GCaguGUugGCa -3'
miRNA:   3'- -CGgUGuaGUCACCGUgCGgu-CAugCG- -5'
19727 5' -54.5 NC_004686.1 + 34028 0.68 0.642914
Target:  5'- uGCCGCcggaaaaacCAGUGGCAUcgagGCCGGUGaugacaGCg -3'
miRNA:   3'- -CGGUGua-------GUCACCGUG----CGGUCAUg-----CG- -5'
19727 5' -54.5 NC_004686.1 + 53284 0.68 0.642914
Target:  5'- -aCACAUCcauGUGGCcuucgcggcGgGCCAGUucACGCa -3'
miRNA:   3'- cgGUGUAGu--CACCG---------UgCGGUCA--UGCG- -5'
19727 5' -54.5 NC_004686.1 + 16876 0.68 0.630754
Target:  5'- cGCCACAcccgucuUCGcgcgGGCACGCUgcacGGUGCGg -3'
miRNA:   3'- -CGGUGU-------AGUca--CCGUGCGG----UCAUGCg -5'
19727 5' -54.5 NC_004686.1 + 40584 0.69 0.598736
Target:  5'- cCCACGUCccaGGUGaGguCaGCCAGUGCGg -3'
miRNA:   3'- cGGUGUAG---UCAC-CguG-CGGUCAUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.