miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19727 5' -54.5 NC_004686.1 + 2757 0.69 0.58774
Target:  5'- gGCCACGUUgaAGUGGCAgGUCGaccGUGaugaGCa -3'
miRNA:   3'- -CGGUGUAG--UCACCGUgCGGU---CAUg---CG- -5'
19727 5' -54.5 NC_004686.1 + 4783 0.66 0.740661
Target:  5'- cCCGCAUcCAGUuGCACGUCAu--CGCg -3'
miRNA:   3'- cGGUGUA-GUCAcCGUGCGGUcauGCG- -5'
19727 5' -54.5 NC_004686.1 + 6255 0.67 0.708659
Target:  5'- cCCGCAUgGGagaUGGUuuuCGCCAGcACGUg -3'
miRNA:   3'- cGGUGUAgUC---ACCGu--GCGGUCaUGCG- -5'
19727 5' -54.5 NC_004686.1 + 6561 0.71 0.495549
Target:  5'- cGCCGCAUgccCAGguucgaucaaacgaGGgGCGCCAGU-CGCa -3'
miRNA:   3'- -CGGUGUA---GUCa-------------CCgUGCGGUCAuGCG- -5'
19727 5' -54.5 NC_004686.1 + 7175 0.76 0.246343
Target:  5'- aGCCACGgccccUCAGUGGUGCcuuCCAGUGCuGCu -3'
miRNA:   3'- -CGGUGU-----AGUCACCGUGc--GGUCAUG-CG- -5'
19727 5' -54.5 NC_004686.1 + 11409 0.66 0.740661
Target:  5'- uCCGgAgUGGUGGC-CGcCCGGUAUGCg -3'
miRNA:   3'- cGGUgUaGUCACCGuGC-GGUCAUGCG- -5'
19727 5' -54.5 NC_004686.1 + 12451 0.81 0.114775
Target:  5'- uGCCACAUCAGggcaauggGGCAcCGCCGGgaccggggGCGCc -3'
miRNA:   3'- -CGGUGUAGUCa-------CCGU-GCGGUCa-------UGCG- -5'
19727 5' -54.5 NC_004686.1 + 14422 0.68 0.653958
Target:  5'- aGCCGCuggCAGaacUGGCACGaCAugGCGCa -3'
miRNA:   3'- -CGGUGua-GUC---ACCGUGCgGUcaUGCG- -5'
19727 5' -54.5 NC_004686.1 + 16876 0.68 0.630754
Target:  5'- cGCCACAcccgucuUCGcgcgGGCACGCUgcacGGUGCGg -3'
miRNA:   3'- -CGGUGU-------AGUca--CCGUGCGG----UCAUGCg -5'
19727 5' -54.5 NC_004686.1 + 19880 0.68 0.664982
Target:  5'- aGCCGCucaaccUCGGcgaccagcucgGGCACGagAGUGCGCg -3'
miRNA:   3'- -CGGUGu-----AGUCa----------CCGUGCggUCAUGCG- -5'
19727 5' -54.5 NC_004686.1 + 22116 0.67 0.719418
Target:  5'- cGUCGag-CAGUGGCGCGCgCGGccucgGCGg -3'
miRNA:   3'- -CGGUguaGUCACCGUGCG-GUCa----UGCg -5'
19727 5' -54.5 NC_004686.1 + 24590 0.78 0.178965
Target:  5'- cGCCugA--GGUGGCGCGUguGUAUGCg -3'
miRNA:   3'- -CGGugUagUCACCGUGCGguCAUGCG- -5'
19727 5' -54.5 NC_004686.1 + 26297 0.7 0.522837
Target:  5'- aUCAUAUCcGUGGCugccgacaaacaACGCCAaUGCGCa -3'
miRNA:   3'- cGGUGUAGuCACCG------------UGCGGUcAUGCG- -5'
19727 5' -54.5 NC_004686.1 + 26681 0.66 0.730089
Target:  5'- -gCGCAuUCAGUGGC-C-CCAGUugGg -3'
miRNA:   3'- cgGUGU-AGUCACCGuGcGGUCAugCg -5'
19727 5' -54.5 NC_004686.1 + 33779 0.69 0.555012
Target:  5'- cCCcCGUCAGgcUGGUACaGCCAGUcgAUGCg -3'
miRNA:   3'- cGGuGUAGUC--ACCGUG-CGGUCA--UGCG- -5'
19727 5' -54.5 NC_004686.1 + 34028 0.68 0.642914
Target:  5'- uGCCGCcggaaaaacCAGUGGCAUcgagGCCGGUGaugacaGCg -3'
miRNA:   3'- -CGGUGua-------GUCACCGUG----CGGUCAUg-----CG- -5'
19727 5' -54.5 NC_004686.1 + 34702 0.71 0.481124
Target:  5'- aGCCGaagcgaAUCGGUGGCAgcggcagaaguuCGCCGGcUACGg -3'
miRNA:   3'- -CGGUg-----UAGUCACCGU------------GCGGUC-AUGCg -5'
19727 5' -54.5 NC_004686.1 + 36827 0.71 0.470947
Target:  5'- cGCC-CAUCGGuUGGCACGUUucgcgugggacgGGUACGa -3'
miRNA:   3'- -CGGuGUAGUC-ACCGUGCGG------------UCAUGCg -5'
19727 5' -54.5 NC_004686.1 + 36904 0.66 0.740661
Target:  5'- cGUCGgAUCcggAGUGGCugGCgAcgagguucucgaGUACGCa -3'
miRNA:   3'- -CGGUgUAG---UCACCGugCGgU------------CAUGCG- -5'
19727 5' -54.5 NC_004686.1 + 39814 0.69 0.58774
Target:  5'- cGCCGCAaguuccccggUC-GUGGCugggacCGCCggcAGUGCGCu -3'
miRNA:   3'- -CGGUGU----------AGuCACCGu-----GCGG---UCAUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.