miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19728 3' -57 NC_004686.1 + 2449 0.66 0.637442
Target:  5'- gACGGuGACcuggACAGUCUUGGUgGCa-CCg -3'
miRNA:   3'- -UGUC-CUGa---UGUCGGAACCAgCGgcGG- -5'
19728 3' -57 NC_004686.1 + 28773 0.66 0.637442
Target:  5'- cGCGGGuuuuaUGCGGCgg-GuGUCGCCGCg -3'
miRNA:   3'- -UGUCCug---AUGUCGgaaC-CAGCGGCGg -5'
19728 3' -57 NC_004686.1 + 41274 0.66 0.626543
Target:  5'- -aGGGGCUugAGUag-GGUgucgaccgUGCCGCCc -3'
miRNA:   3'- ugUCCUGAugUCGgaaCCA--------GCGGCGG- -5'
19728 3' -57 NC_004686.1 + 31679 0.66 0.626543
Target:  5'- ---cGACcGCAGCacc-GUCGCCGCCg -3'
miRNA:   3'- ugucCUGaUGUCGgaacCAGCGGCGG- -5'
19728 3' -57 NC_004686.1 + 40982 0.66 0.626543
Target:  5'- -aGGGACUGCuGaCCgacaaagaGGUCGCCGaCg -3'
miRNA:   3'- ugUCCUGAUGuC-GGaa------CCAGCGGCgG- -5'
19728 3' -57 NC_004686.1 + 31026 0.66 0.615648
Target:  5'- gACAGaACcaccaGCAGCCUUGGcCGCgaccacagcaCGCCg -3'
miRNA:   3'- -UGUCcUGa----UGUCGGAACCaGCG----------GCGG- -5'
19728 3' -57 NC_004686.1 + 33845 0.67 0.572298
Target:  5'- gACGGcGACUugGGCCggGGUgaCGCgaagGCCg -3'
miRNA:   3'- -UGUC-CUGAugUCGGaaCCA--GCGg---CGG- -5'
19728 3' -57 NC_004686.1 + 48888 0.67 0.560489
Target:  5'- uCAGGGCUACGccacgcggacggcGCaCggaaucUGGcCGCCGCCc -3'
miRNA:   3'- uGUCCUGAUGU-------------CG-Ga-----ACCaGCGGCGG- -5'
19728 3' -57 NC_004686.1 + 43222 0.67 0.52971
Target:  5'- cCGGGACUuCuGCUUUGcGcggCGCUGCCg -3'
miRNA:   3'- uGUCCUGAuGuCGGAAC-Ca--GCGGCGG- -5'
19728 3' -57 NC_004686.1 + 23716 0.68 0.508847
Target:  5'- cCGGGACUACGGgCacaccgUGaacaacaucGUCGCCGUCa -3'
miRNA:   3'- uGUCCUGAUGUCgGa-----AC---------CAGCGGCGG- -5'
19728 3' -57 NC_004686.1 + 34205 0.68 0.468226
Target:  5'- cACcGGAaUAC-GCCUUGGcaccgccagCGCCGCCg -3'
miRNA:   3'- -UGuCCUgAUGuCGGAACCa--------GCGGCGG- -5'
19728 3' -57 NC_004686.1 + 9781 0.69 0.45833
Target:  5'- cCAacACUGCcGCCacugcGGUCGCCGCCg -3'
miRNA:   3'- uGUccUGAUGuCGGaa---CCAGCGGCGG- -5'
19728 3' -57 NC_004686.1 + 48839 0.7 0.401449
Target:  5'- --cGGACUGCaccGGgUUUGGUCGUCGUCc -3'
miRNA:   3'- uguCCUGAUG---UCgGAACCAGCGGCGG- -5'
19728 3' -57 NC_004686.1 + 972 0.71 0.332977
Target:  5'- -gGGGACUcUGGCUguUUGGUCGUCGCa -3'
miRNA:   3'- ugUCCUGAuGUCGG--AACCAGCGGCGg -5'
19728 3' -57 NC_004686.1 + 31844 0.71 0.325045
Target:  5'- gACGGGGCUccACAcggcGCCUUGucCGCCGCUg -3'
miRNA:   3'- -UGUCCUGA--UGU----CGGAACcaGCGGCGG- -5'
19728 3' -57 NC_004686.1 + 34002 0.74 0.211445
Target:  5'- --uGGGCUGCuGCCgccGUUGCCGCCg -3'
miRNA:   3'- uguCCUGAUGuCGGaacCAGCGGCGG- -5'
19728 3' -57 NC_004686.1 + 52896 0.76 0.153356
Target:  5'- cCAGGAUcaUGCGGCgCaUGGcUCGCCGCCu -3'
miRNA:   3'- uGUCCUG--AUGUCG-GaACC-AGCGGCGG- -5'
19728 3' -57 NC_004686.1 + 54286 1.11 0.000486
Target:  5'- aACAGGACUACAGCCUUGGUCGCCGCCu -3'
miRNA:   3'- -UGUCCUGAUGUCGGAACCAGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.