miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19728 5' -54.5 NC_004686.1 + 38728 0.66 0.754497
Target:  5'- cCGGGUGAcCGUcucCCACaCCUcgcGCGGC-UGCa -3'
miRNA:   3'- -GUCUACU-GCA---GGUG-GGA---CGUCGuACG- -5'
19728 5' -54.5 NC_004686.1 + 42980 0.66 0.754497
Target:  5'- --cGUGGCGUCCAacgggCUGUGGgCAUGCg -3'
miRNA:   3'- gucUACUGCAGGUgg---GACGUC-GUACG- -5'
19728 5' -54.5 NC_004686.1 + 30783 0.66 0.743998
Target:  5'- ---uUGAUGUCCAUCUaGCGGCG-GCc -3'
miRNA:   3'- gucuACUGCAGGUGGGaCGUCGUaCG- -5'
19728 5' -54.5 NC_004686.1 + 19488 0.66 0.722665
Target:  5'- uGGGUGAaGUuuuaCCGCCgUGCGGUggAUGCg -3'
miRNA:   3'- gUCUACUgCA----GGUGGgACGUCG--UACG- -5'
19728 5' -54.5 NC_004686.1 + 33583 0.66 0.711854
Target:  5'- -uGAUGGCGaUCUGCCCgGCGGUGgggGUg -3'
miRNA:   3'- guCUACUGC-AGGUGGGaCGUCGUa--CG- -5'
19728 5' -54.5 NC_004686.1 + 51089 0.67 0.690003
Target:  5'- uGGGUGACcUgCACCUUGCGGgGgaugGCg -3'
miRNA:   3'- gUCUACUGcAgGUGGGACGUCgUa---CG- -5'
19728 5' -54.5 NC_004686.1 + 8962 0.67 0.667924
Target:  5'- gGGGUGACGUCCGCgaCCUGaC-GCcugGCu -3'
miRNA:   3'- gUCUACUGCAGGUG--GGAC-GuCGua-CG- -5'
19728 5' -54.5 NC_004686.1 + 38637 0.67 0.667924
Target:  5'- cCAGGUGGCGUucuucgUCGCCgCUGCGGaaucgGUGUa -3'
miRNA:   3'- -GUCUACUGCA------GGUGG-GACGUCg----UACG- -5'
19728 5' -54.5 NC_004686.1 + 2714 0.68 0.645708
Target:  5'- gGGGUGGaguUGUUCACCCUGgcaGGUGUGUg -3'
miRNA:   3'- gUCUACU---GCAGGUGGGACg--UCGUACG- -5'
19728 5' -54.5 NC_004686.1 + 10135 0.7 0.503452
Target:  5'- uCAGAaccuUGACG-CCGCCUUGgGGCGgcucgGCg -3'
miRNA:   3'- -GUCU----ACUGCaGGUGGGACgUCGUa----CG- -5'
19728 5' -54.5 NC_004686.1 + 6347 0.74 0.3176
Target:  5'- uCGGGUuccGACuGUCCAgCCguUGCGGCGUGCg -3'
miRNA:   3'- -GUCUA---CUG-CAGGUgGG--ACGUCGUACG- -5'
19728 5' -54.5 NC_004686.1 + 45860 0.75 0.265945
Target:  5'- aCAGcuucuAUGAUGUCCgaugcGCCCUGCAGUGUGg -3'
miRNA:   3'- -GUC-----UACUGCAGG-----UGGGACGUCGUACg -5'
19728 5' -54.5 NC_004686.1 + 54320 1.12 0.000643
Target:  5'- cCAGAUGACGUCCACCCUGCAGCAUGCa -3'
miRNA:   3'- -GUCUACUGCAGGUGGGACGUCGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.