Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 27545 | 0.66 | 0.709165 |
|
Target: 5'- -aGUCUgCCGCUucaccUUCCgCAACCUCu -3' miRNA: 3'- agCAGAgGGCGGuu---AGGGaGUUGGAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 27425 | 0.66 | 0.709165 |
|
Target: 5'- cCGaCUUCCGCCGGggUCUCAugUUCg -3' miRNA: 3'- aGCaGAGGGCGGUUagGGAGUugGAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 42786 | 0.66 | 0.67677 |
|
Target: 5'- -gGUUUCCCGCCccacgagaAGUCCggCAGCgUCg -3' miRNA: 3'- agCAGAGGGCGG--------UUAGGgaGUUGgAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 15913 | 0.67 | 0.633036 |
|
Target: 5'- cUCGgguacuggCCgGCCGcugagGUCaCCUCGACCUCa -3' miRNA: 3'- -AGCaga-----GGgCGGU-----UAG-GGAGUUGGAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 13772 | 0.67 | 0.622075 |
|
Target: 5'- gCGUCgaaCGCCAAauucuucugcCCCUCAACCUUc -3' miRNA: 3'- aGCAGaggGCGGUUa---------GGGAGUUGGAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 56106 | 0.67 | 0.589283 |
|
Target: 5'- gCGUC-CCCGUCAcgCCggCgAACCUCa -3' miRNA: 3'- aGCAGaGGGCGGUuaGGgaG-UUGGAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 37373 | 0.68 | 0.535446 |
|
Target: 5'- cUCGUCgcgCaCCGCCg--CCgUCGACUUCa -3' miRNA: 3'- -AGCAGa--G-GGCGGuuaGGgAGUUGGAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 6196 | 0.69 | 0.503969 |
|
Target: 5'- ---cCUCCCGCCAAUCCCggCAcacgaACgUCc -3' miRNA: 3'- agcaGAGGGCGGUUAGGGa-GU-----UGgAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 27833 | 0.69 | 0.503969 |
|
Target: 5'- gCGuUCUCCCGUCugagaCCUUCAacaACCUCa -3' miRNA: 3'- aGC-AGAGGGCGGuua--GGGAGU---UGGAG- -5' |
|||||||
| 19729 | 3' | -55.9 | NC_004686.1 | + | 55234 | 1.11 | 0.000657 |
|
Target: 5'- aUCGUCUCCCGCCAAUCCCUCAACCUCa -3' miRNA: 3'- -AGCAGAGGGCGGUUAGGGAGUUGGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home