miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19729 5' -54.5 NC_004686.1 + 120 0.66 0.769995
Target:  5'- -cACGGCGucgcGGGUccaccggUCGcGGGUGCCg -3'
miRNA:   3'- uaUGCUGCu---CCCAa------AGCuUCCGCGGa -5'
19729 5' -54.5 NC_004686.1 + 31951 0.66 0.759714
Target:  5'- -cGCGACGGcGGGUauccCGAGGGCGa-- -3'
miRNA:   3'- uaUGCUGCU-CCCAaa--GCUUCCGCgga -5'
19729 5' -54.5 NC_004686.1 + 4074 0.66 0.759714
Target:  5'- uGUGCGGUGAuguccucaaccaGGGUggugucUUGggGGCGCCa -3'
miRNA:   3'- -UAUGCUGCU------------CCCAa-----AGCuuCCGCGGa -5'
19729 5' -54.5 NC_004686.1 + 12872 0.66 0.759714
Target:  5'- -cACGGCGAGGaccgcggUCGGcaGGGUGUCUa -3'
miRNA:   3'- uaUGCUGCUCCcaa----AGCU--UCCGCGGA- -5'
19729 5' -54.5 NC_004686.1 + 32662 0.66 0.755564
Target:  5'- --gUGACGAGGGcgacuuuccaggUgucggagucgaggUCGAAGGUGCCg -3'
miRNA:   3'- uauGCUGCUCCC------------Aa------------AGCUUCCGCGGa -5'
19729 5' -54.5 NC_004686.1 + 12749 0.66 0.7493
Target:  5'- -gGCGAUGAGcaagcUUUCGAAGGUGCa- -3'
miRNA:   3'- uaUGCUGCUCcc---AAAGCUUCCGCGga -5'
19729 5' -54.5 NC_004686.1 + 21894 0.66 0.7493
Target:  5'- -gGCGGCGGcGGUggCGGuggcGGUGCCUa -3'
miRNA:   3'- uaUGCUGCUcCCAaaGCUu---CCGCGGA- -5'
19729 5' -54.5 NC_004686.1 + 23822 0.66 0.728121
Target:  5'- -cGCGGCGAGcGGagagccgaGAAGGCGCa- -3'
miRNA:   3'- uaUGCUGCUC-CCaaag----CUUCCGCGga -5'
19729 5' -54.5 NC_004686.1 + 10492 0.67 0.684683
Target:  5'- cUGgGGCGAGGGacUUCaGAAGGUGUCc -3'
miRNA:   3'- uAUgCUGCUCCCa-AAG-CUUCCGCGGa -5'
19729 5' -54.5 NC_004686.1 + 39783 0.67 0.673667
Target:  5'- -gGCGACGguGGGGUgcagUCGAAccgcguuGCGCCg -3'
miRNA:   3'- uaUGCUGC--UCCCAa---AGCUUc------CGCGGa -5'
19729 5' -54.5 NC_004686.1 + 5038 0.67 0.662611
Target:  5'- -cGCGGCGAGGucGUcggUGAAGGUGCUc -3'
miRNA:   3'- uaUGCUGCUCC--CAaa-GCUUCCGCGGa -5'
19729 5' -54.5 NC_004686.1 + 16437 0.68 0.640423
Target:  5'- -cACgGACG-GGGUUUUuuuGGGCGCCg -3'
miRNA:   3'- uaUG-CUGCuCCCAAAGcu-UCCGCGGa -5'
19729 5' -54.5 NC_004686.1 + 33841 0.7 0.488353
Target:  5'- cUGCGACGgcgacuugggccGGGGUgacgCGAAGGCcgGCCg -3'
miRNA:   3'- uAUGCUGC------------UCCCAaa--GCUUCCG--CGGa -5'
19729 5' -54.5 NC_004686.1 + 55268 1.06 0.001798
Target:  5'- aAUACGACGAGGGUUUCGAAGGCGCCUg -3'
miRNA:   3'- -UAUGCUGCUCCCAAAGCUUCCGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.