miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19730 5' -57.1 NC_004686.1 + 4920 0.66 0.65074
Target:  5'- aGCACCUGGugcCCGgCGUGuGGCAgaAGGCu -3'
miRNA:   3'- gUGUGGACU---GGCgGCGC-CUGU--UUCGc -5'
19730 5' -57.1 NC_004686.1 + 15474 0.66 0.65074
Target:  5'- --gGCCUGGuaugCGUgGCGGACAGuuGGCGa -3'
miRNA:   3'- gugUGGACUg---GCGgCGCCUGUU--UCGC- -5'
19730 5' -57.1 NC_004686.1 + 50600 0.66 0.65074
Target:  5'- aUugACCgGgccaaagaggaaGCCGCCGCGGGgGAuuaccaGGCGg -3'
miRNA:   3'- -GugUGGaC------------UGGCGGCGCCUgUU------UCGC- -5'
19730 5' -57.1 NC_004686.1 + 31111 0.66 0.639901
Target:  5'- aGCugC-GACCGCUGCGGcuCAGGGaCa -3'
miRNA:   3'- gUGugGaCUGGCGGCGCCu-GUUUC-Gc -5'
19730 5' -57.1 NC_004686.1 + 20337 0.66 0.625802
Target:  5'- aAUGCUgaaugGACgGCCGCGGGCGAGaaugaaacgucaucGCGu -3'
miRNA:   3'- gUGUGGa----CUGgCGGCGCCUGUUU--------------CGC- -5'
19730 5' -57.1 NC_004686.1 + 48406 0.66 0.618212
Target:  5'- cUACACCgagGuCCGCCGUGaguucGACGGGcGCGa -3'
miRNA:   3'- -GUGUGGa--CuGGCGGCGC-----CUGUUU-CGC- -5'
19730 5' -57.1 NC_004686.1 + 43938 0.66 0.618212
Target:  5'- -uCACCgagUGGCuUGCCGCGGACGu-GCu -3'
miRNA:   3'- guGUGG---ACUG-GCGGCGCCUGUuuCGc -5'
19730 5' -57.1 NC_004686.1 + 43233 0.66 0.618212
Target:  5'- -uCACCgagUGGCuUGCCGCGGACGu-GCu -3'
miRNA:   3'- guGUGG---ACUG-GCGGCGCCUGUuuCGc -5'
19730 5' -57.1 NC_004686.1 + 111 0.66 0.618212
Target:  5'- gACGCUccgUGugCGuuGCGGAuCAccGCGg -3'
miRNA:   3'- gUGUGG---ACugGCggCGCCU-GUuuCGC- -5'
19730 5' -57.1 NC_004686.1 + 45036 0.66 0.618212
Target:  5'- uCGCACCggcgcgGAUCGCCGCacGCAAcGCa -3'
miRNA:   3'- -GUGUGGa-----CUGGCGGCGccUGUUuCGc -5'
19730 5' -57.1 NC_004686.1 + 30371 0.66 0.607381
Target:  5'- gUugAUCUGuCCcgGCCGCGGGCc-GGCGc -3'
miRNA:   3'- -GugUGGACuGG--CGGCGCCUGuuUCGC- -5'
19730 5' -57.1 NC_004686.1 + 54056 0.66 0.607381
Target:  5'- cCACACCagcgcUGuuCGCCGCG-ACAucGCGu -3'
miRNA:   3'- -GUGUGG-----ACugGCGGCGCcUGUuuCGC- -5'
19730 5' -57.1 NC_004686.1 + 45011 0.66 0.59657
Target:  5'- aCGCGCCggcaUGACUGUCGUaGGACAGGuCGa -3'
miRNA:   3'- -GUGUGG----ACUGGCGGCG-CCUGUUUcGC- -5'
19730 5' -57.1 NC_004686.1 + 7307 0.66 0.59657
Target:  5'- uGCGCCgu-CCGCCGUGG-CGuAGCc -3'
miRNA:   3'- gUGUGGacuGGCGGCGCCuGUuUCGc -5'
19730 5' -57.1 NC_004686.1 + 6140 0.67 0.585789
Target:  5'- aGCugauCCUGAUCGgCGCGGugAu-GCGc -3'
miRNA:   3'- gUGu---GGACUGGCgGCGCCugUuuCGC- -5'
19730 5' -57.1 NC_004686.1 + 3558 0.67 0.552641
Target:  5'- cCGCAgCCUcaacaaugcucggGuuuCCGCCuucGCGGGCGAGGCGa -3'
miRNA:   3'- -GUGU-GGA-------------Cu--GGCGG---CGCCUGUUUCGC- -5'
19730 5' -57.1 NC_004686.1 + 35052 0.67 0.552641
Target:  5'- aACGCCUGACCacccuuaGCCGCGucguuguuguGAUAAacgacAGCGa -3'
miRNA:   3'- gUGUGGACUGG-------CGGCGC----------CUGUU-----UCGC- -5'
19730 5' -57.1 NC_004686.1 + 43741 0.67 0.532601
Target:  5'- aCGCaACCUGgGCCGCCGCGc-CAucGGCGu -3'
miRNA:   3'- -GUG-UGGAC-UGGCGGCGCcuGUu-UCGC- -5'
19730 5' -57.1 NC_004686.1 + 54222 0.68 0.522158
Target:  5'- gCACGCCaguaCGCCGCGGaACAcAGCc -3'
miRNA:   3'- -GUGUGGacugGCGGCGCC-UGUuUCGc -5'
19730 5' -57.1 NC_004686.1 + 49290 0.68 0.505619
Target:  5'- aCGCGCUUgguccgaacccgacgGACCGaCGUGcGACGAAGCGa -3'
miRNA:   3'- -GUGUGGA---------------CUGGCgGCGC-CUGUUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.