miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19732 3' -57.5 NC_004686.1 + 32835 0.66 0.582296
Target:  5'- -gGGGACGaaaaCaCUCGCCCAGgGGguCGa -3'
miRNA:   3'- caCCUUGCg---G-GAGCGGGUUgUCguGU- -5'
19732 3' -57.5 NC_004686.1 + 34755 0.66 0.582296
Target:  5'- -aGGAACGUCuCUaCGCCUAuCAGUGCc -3'
miRNA:   3'- caCCUUGCGG-GA-GCGGGUuGUCGUGu -5'
19732 3' -57.5 NC_004686.1 + 22124 0.66 0.571467
Target:  5'- aGUGGcGCGCgCg-GCCuCGGCGGCACc -3'
miRNA:   3'- -CACCuUGCGgGagCGG-GUUGUCGUGu -5'
19732 3' -57.5 NC_004686.1 + 38839 0.66 0.571467
Target:  5'- -gGGAAUGUCUgaCGCCCAGuuggcCAGCGCc -3'
miRNA:   3'- caCCUUGCGGGa-GCGGGUU-----GUCGUGu -5'
19732 3' -57.5 NC_004686.1 + 34358 0.66 0.560688
Target:  5'- -cGGAGCcgccGCCCgCGCCCGcgccGCcgaGGCGCAc -3'
miRNA:   3'- caCCUUG----CGGGaGCGGGU----UG---UCGUGU- -5'
19732 3' -57.5 NC_004686.1 + 587 0.66 0.539307
Target:  5'- gGUGGu-UGCCCUCGCacCCGAgGGUGCc -3'
miRNA:   3'- -CACCuuGCGGGAGCG--GGUUgUCGUGu -5'
19732 3' -57.5 NC_004686.1 + 36275 0.67 0.52872
Target:  5'- -aGGAAUGCCgaguuagUCGCCCA--GGCGCGc -3'
miRNA:   3'- caCCUUGCGGg------AGCGGGUugUCGUGU- -5'
19732 3' -57.5 NC_004686.1 + 34208 0.67 0.51821
Target:  5'- -cGGAauACGCCUUgGCaCCGcCAGCGCc -3'
miRNA:   3'- caCCU--UGCGGGAgCG-GGUuGUCGUGu -5'
19732 3' -57.5 NC_004686.1 + 34902 0.67 0.507784
Target:  5'- aUGGGACguGCCCU-GCCCAaaguucACcGCACAg -3'
miRNA:   3'- cACCUUG--CGGGAgCGGGU------UGuCGUGU- -5'
19732 3' -57.5 NC_004686.1 + 11737 0.67 0.497449
Target:  5'- aUGGcgGGCaCCCU-GCCCAACGGCAUc -3'
miRNA:   3'- cACC--UUGcGGGAgCGGGUUGUCGUGu -5'
19732 3' -57.5 NC_004686.1 + 32340 0.67 0.497449
Target:  5'- -cGGcguccuucAACGCCCg-GUUCAGCAGCACGu -3'
miRNA:   3'- caCC--------UUGCGGGagCGGGUUGUCGUGU- -5'
19732 3' -57.5 NC_004686.1 + 54933 0.68 0.467035
Target:  5'- cGUGGAcgacggACGCaCCggagaCGCCCAguucaaccGCAGCGCc -3'
miRNA:   3'- -CACCU------UGCG-GGa----GCGGGU--------UGUCGUGu -5'
19732 3' -57.5 NC_004686.1 + 4264 0.68 0.467035
Target:  5'- -cGGGuuACGCCCaCGUCCGGCGGUcaACGg -3'
miRNA:   3'- caCCU--UGCGGGaGCGGGUUGUCG--UGU- -5'
19732 3' -57.5 NC_004686.1 + 15681 0.68 0.457111
Target:  5'- aUGcGGugGCCCggcugaCGCCgCAGCAGCAg- -3'
miRNA:   3'- cAC-CUugCGGGa-----GCGG-GUUGUCGUgu -5'
19732 3' -57.5 NC_004686.1 + 25926 0.68 0.447301
Target:  5'- -cGGAAUGCCCga--CCGGCAGCAg- -3'
miRNA:   3'- caCCUUGCGGGagcgGGUUGUCGUgu -5'
19732 3' -57.5 NC_004686.1 + 17012 0.69 0.40009
Target:  5'- -cGGucauGCGCCCcaccucugCGCCCGuCGGCACu -3'
miRNA:   3'- caCCu---UGCGGGa-------GCGGGUuGUCGUGu -5'
19732 3' -57.5 NC_004686.1 + 20933 0.7 0.330711
Target:  5'- -cGGAaccgacaacuccaACGCCUUCGCUCAGCcagcucGGCGCGa -3'
miRNA:   3'- caCCU-------------UGCGGGAGCGGGUUG------UCGUGU- -5'
19732 3' -57.5 NC_004686.1 + 49171 0.7 0.323571
Target:  5'- -gGGGACGCCgaguucaUCGCCCA--GGCGCGc -3'
miRNA:   3'- caCCUUGCGGg------AGCGGGUugUCGUGU- -5'
19732 3' -57.5 NC_004686.1 + 14887 0.71 0.313463
Target:  5'- uUGGGugGU-CUCGCCCAgaucggguccuuggGCGGCACGg -3'
miRNA:   3'- cACCUugCGgGAGCGGGU--------------UGUCGUGU- -5'
19732 3' -57.5 NC_004686.1 + 39265 0.71 0.30812
Target:  5'- uUGGAcCGCCacgcagaUCGCCgAACAGCugGg -3'
miRNA:   3'- cACCUuGCGGg------AGCGGgUUGUCGugU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.