miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19732 5' -52.1 NC_004686.1 + 1517 0.66 0.895899
Target:  5'- cGCcGUGGUACUCGucGAacaccaGaAUGCAGc -3'
miRNA:   3'- -CGaCACCAUGAGCuuCUg-----C-UGCGUCa -5'
19732 5' -52.1 NC_004686.1 + 47732 0.66 0.895898
Target:  5'- -gUGUGGUug-CGggGACGAgUGUGGUg -3'
miRNA:   3'- cgACACCAugaGCuuCUGCU-GCGUCA- -5'
19732 5' -52.1 NC_004686.1 + 49799 0.66 0.888591
Target:  5'- cGCUG-GGUGuCgggauggagCGAGGcaugaGCGACGCAGa -3'
miRNA:   3'- -CGACaCCAU-Ga--------GCUUC-----UGCUGCGUCa -5'
19732 5' -52.1 NC_004686.1 + 19407 0.66 0.881013
Target:  5'- --gGUGGUAUcgCGccGGGugGugGCGGUa -3'
miRNA:   3'- cgaCACCAUGa-GC--UUCugCugCGUCA- -5'
19732 5' -52.1 NC_004686.1 + 10575 0.66 0.865068
Target:  5'- --cGUGG-GCUgCGAAGACGaaagccgccGCGCAGg -3'
miRNA:   3'- cgaCACCaUGA-GCUUCUGC---------UGCGUCa -5'
19732 5' -52.1 NC_004686.1 + 6937 0.66 0.856715
Target:  5'- --aGUGGUGgUgGAAGAUGACGauCAGg -3'
miRNA:   3'- cgaCACCAUgAgCUUCUGCUGC--GUCa -5'
19732 5' -52.1 NC_004686.1 + 19568 0.67 0.848119
Target:  5'- gGUUGUGGUGggcaagacguuCUCGAGGAUcacugugcGCGCAGa -3'
miRNA:   3'- -CGACACCAU-----------GAGCUUCUGc-------UGCGUCa -5'
19732 5' -52.1 NC_004686.1 + 3402 0.68 0.781925
Target:  5'- ----cGGUAUcugUCGAAGuCGGCGCAGg -3'
miRNA:   3'- cgacaCCAUG---AGCUUCuGCUGCGUCa -5'
19732 5' -52.1 NC_004686.1 + 29007 0.68 0.771735
Target:  5'- cGgUGUGGUuCUUGAAcGGCaACGCGGUg -3'
miRNA:   3'- -CgACACCAuGAGCUU-CUGcUGCGUCA- -5'
19732 5' -52.1 NC_004686.1 + 143 0.68 0.771735
Target:  5'- cGCg--GGUGC-CGAaccgccAGGCGACGCGGc -3'
miRNA:   3'- -CGacaCCAUGaGCU------UCUGCUGCGUCa -5'
19732 5' -52.1 NC_004686.1 + 52235 0.7 0.685858
Target:  5'- cGCUGUGGUguaccgcaagaACUCGuccGGCGAUcCAGUg -3'
miRNA:   3'- -CGACACCA-----------UGAGCuu-CUGCUGcGUCA- -5'
19732 5' -52.1 NC_004686.1 + 55676 1.09 0.002252
Target:  5'- gGCUGUGGUACUCGAAGACGACGCAGUc -3'
miRNA:   3'- -CGACACCAUGAGCUUCUGCUGCGUCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.