miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19733 5' -59.8 NC_004686.1 + 46394 0.66 0.514213
Target:  5'- --aCUGuCCaGUGGGGACGCcGGCGGc -3'
miRNA:   3'- gggGACuGGaCGCCUUUGCG-CCGCCa -5'
19733 5' -59.8 NC_004686.1 + 44239 0.66 0.514213
Target:  5'- gUCCCgaAUCUGUgGGGAGCGCGGCa-- -3'
miRNA:   3'- -GGGGacUGGACG-CCUUUGCGCCGcca -5'
19733 5' -59.8 NC_004686.1 + 3019 0.66 0.484301
Target:  5'- gCCCUGACUgGUGGAgagaAACgguucguccuaGCGGUGGa -3'
miRNA:   3'- gGGGACUGGaCGCCU----UUG-----------CGCCGCCa -5'
19733 5' -59.8 NC_004686.1 + 55406 0.66 0.484301
Target:  5'- -aCCUGACCgccGCGGAcaaaGCGGCa-- -3'
miRNA:   3'- ggGGACUGGa--CGCCUuug-CGCCGcca -5'
19733 5' -59.8 NC_004686.1 + 25585 0.66 0.484301
Target:  5'- uCCgCC-GGCCUGCGGu-ACaUGGCGGa -3'
miRNA:   3'- -GG-GGaCUGGACGCCuuUGcGCCGCCa -5'
19733 5' -59.8 NC_004686.1 + 24430 0.67 0.46483
Target:  5'- aCCgUGAagcgCUGCGuGAAGCgcuGCGGCGGc -3'
miRNA:   3'- gGGgACUg---GACGC-CUUUG---CGCCGCCa -5'
19733 5' -59.8 NC_004686.1 + 51095 0.67 0.418031
Target:  5'- -aCCUGcACCuUGCGGggGa-UGGCGGUg -3'
miRNA:   3'- ggGGAC-UGG-ACGCCuuUgcGCCGCCA- -5'
19733 5' -59.8 NC_004686.1 + 7258 0.67 0.416219
Target:  5'- cCCCCUcGGCUacaacagcagcgGCGaGAAGgGCGGCGGc -3'
miRNA:   3'- -GGGGA-CUGGa-----------CGC-CUUUgCGCCGCCa -5'
19733 5' -59.8 NC_004686.1 + 42496 0.68 0.40902
Target:  5'- aCUCUUGACCccacggGCGGGAccaGCGCcGCGGc -3'
miRNA:   3'- -GGGGACUGGa-----CGCCUU---UGCGcCGCCa -5'
19733 5' -59.8 NC_004686.1 + 40369 0.68 0.36917
Target:  5'- --aCUGACCUGCGGccaguucgaagacguGAAcaaagucuugucCGCGGCGGa -3'
miRNA:   3'- gggGACUGGACGCC---------------UUU------------GCGCCGCCa -5'
19733 5' -59.8 NC_004686.1 + 50467 0.68 0.365833
Target:  5'- uCCCCUGGgacacCCUGuCGGAGcuggagaaggauGCGUGGCGu- -3'
miRNA:   3'- -GGGGACU-----GGAC-GCCUU------------UGCGCCGCca -5'
19733 5' -59.8 NC_004686.1 + 5511 0.69 0.357581
Target:  5'- uUCCUUcGCCgGCcuGAACGCGGCGGUg -3'
miRNA:   3'- -GGGGAcUGGaCGccUUUGCGCCGCCA- -5'
19733 5' -59.8 NC_004686.1 + 17239 0.69 0.331287
Target:  5'- gCCUgagGAUCUGCGGGAGgGCGucgaguucacccguGCGGUg -3'
miRNA:   3'- gGGGa--CUGGACGCCUUUgCGC--------------CGCCA- -5'
19733 5' -59.8 NC_004686.1 + 54900 0.7 0.296343
Target:  5'- gCCacuuCCUGCGG--GCGCGGCGGc -3'
miRNA:   3'- gGGgacuGGACGCCuuUGCGCCGCCa -5'
19733 5' -59.8 NC_004686.1 + 3458 0.7 0.289287
Target:  5'- gCCgUGGCUUGCGGAGACcgaGGuCGGUu -3'
miRNA:   3'- gGGgACUGGACGCCUUUGcg-CC-GCCA- -5'
19733 5' -59.8 NC_004686.1 + 43694 0.71 0.255986
Target:  5'- gCCCaggaggUGGcCCUGCGGGAAgUGCGGgGGUa -3'
miRNA:   3'- gGGG------ACU-GGACGCCUUU-GCGCCgCCA- -5'
19733 5' -59.8 NC_004686.1 + 47403 0.72 0.209314
Target:  5'- gCCUUGGCCUGCGcGAucucCGCGGaGGUg -3'
miRNA:   3'- gGGGACUGGACGC-CUuu--GCGCCgCCA- -5'
19733 5' -59.8 NC_004686.1 + 16735 0.73 0.193795
Target:  5'- aCCCUGGCC-GCGGAAAUGCGccgagaucGUGGc -3'
miRNA:   3'- gGGGACUGGaCGCCUUUGCGC--------CGCCa -5'
19733 5' -59.8 NC_004686.1 + 21801 0.73 0.18885
Target:  5'- aCCCCUGucggcgcgacgcACUUGCGGguGCGCcucGGCGGc -3'
miRNA:   3'- -GGGGAC------------UGGACGCCuuUGCG---CCGCCa -5'
19733 5' -59.8 NC_004686.1 + 56130 1.08 0.000509
Target:  5'- gCCCCUGACCUGCGGAAACGCGGCGGUc -3'
miRNA:   3'- -GGGGACUGGACGCCUUUGCGCCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.