miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19734 3' -60.8 NC_004687.1 + 108204 0.66 0.6789
Target:  5'- cUUUCG-GCgAGCGCCUgcgGGCCCuGGUGGAc -3'
miRNA:   3'- -AGAGUgCG-UCGUGGA---CCGGG-UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 152881 0.66 0.6789
Target:  5'- aCgagCuCGCGGCcuacuuCCUGGCCCGGCa-- -3'
miRNA:   3'- aGa--GuGCGUCGu-----GGACCGGGUCGccu -5'
19734 3' -60.8 NC_004687.1 + 149314 0.66 0.677911
Target:  5'- cCUCGauCGCGGuCGCCgacuacgUGGCCCgcAGCGGu -3'
miRNA:   3'- aGAGU--GCGUC-GUGG-------ACCGGG--UCGCCu -5'
19734 3' -60.8 NC_004687.1 + 148835 0.66 0.668989
Target:  5'- --cCGCGCgugaggAGCGCaaGGCCgAGCGGGc -3'
miRNA:   3'- agaGUGCG------UCGUGgaCCGGgUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 50980 0.66 0.668989
Target:  5'- --cCugGCGGCgACCggcggUGGUCUGGCGGGa -3'
miRNA:   3'- agaGugCGUCG-UGG-----ACCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 76295 0.66 0.668989
Target:  5'- aCUUGCGCAugaugucgGCGCCggaGGUCCGGCGu- -3'
miRNA:   3'- aGAGUGCGU--------CGUGGa--CCGGGUCGCcu -5'
19734 3' -60.8 NC_004687.1 + 66352 0.66 0.668989
Target:  5'- gCUCGCuguuggcgucGUAGUACC-GGacgcCCCAGCGGAu -3'
miRNA:   3'- aGAGUG----------CGUCGUGGaCC----GGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 129437 0.66 0.668989
Target:  5'- aUCgCACGCAGgGCCaggUGGUCguGgGGAa -3'
miRNA:   3'- -AGaGUGCGUCgUGG---ACCGGguCgCCU- -5'
19734 3' -60.8 NC_004687.1 + 23032 0.66 0.659049
Target:  5'- ---aACGCAGCuCgUGGUCgCGGCGGGc -3'
miRNA:   3'- agagUGCGUCGuGgACCGG-GUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 117903 0.66 0.659049
Target:  5'- aCUCGCGC-GCgaaCUGGUCUGGCaGGAa -3'
miRNA:   3'- aGAGUGCGuCGug-GACCGGGUCG-CCU- -5'
19734 3' -60.8 NC_004687.1 + 68762 0.66 0.659049
Target:  5'- cCUCGCGCuGCGCgacGCCauCAGCGGGa -3'
miRNA:   3'- aGAGUGCGuCGUGgacCGG--GUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 111837 0.66 0.659049
Target:  5'- -gUCgACGCGacCGCCUgGGCCUGGCGGGc -3'
miRNA:   3'- agAG-UGCGUc-GUGGA-CCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 41996 0.66 0.659049
Target:  5'- gUUgGCGCAGaagAUCgugGuGCCCGGCGGAg -3'
miRNA:   3'- aGAgUGCGUCg--UGGa--C-CGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 92440 0.66 0.658054
Target:  5'- gCUCGgccUGCAGUGCCaucuccgacggauUGGCCaCGGCGGu -3'
miRNA:   3'- aGAGU---GCGUCGUGG-------------ACCGG-GUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 145949 0.67 0.649089
Target:  5'- -aUCAgGaaCAGCACCagGGCuCCGGCGGc -3'
miRNA:   3'- agAGUgC--GUCGUGGa-CCG-GGUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 125571 0.67 0.649089
Target:  5'- cCUCuuCGCGGCGCUcgccaagcuUGGCCUgcucgcuGCGGAu -3'
miRNA:   3'- aGAGu-GCGUCGUGG---------ACCGGGu------CGCCU- -5'
19734 3' -60.8 NC_004687.1 + 141619 0.67 0.649089
Target:  5'- --cCACGCAGCccucuGCCaucaUGGCCCGuCGGGu -3'
miRNA:   3'- agaGUGCGUCG-----UGG----ACCGGGUcGCCU- -5'
19734 3' -60.8 NC_004687.1 + 119345 0.67 0.649089
Target:  5'- --cCAUGCAGCAguuccugCUGGCCCAGCc-- -3'
miRNA:   3'- agaGUGCGUCGUg------GACCGGGUCGccu -5'
19734 3' -60.8 NC_004687.1 + 68797 0.67 0.649089
Target:  5'- --aCACGCugcauguccAGCACCUGGCgCCAGUu-- -3'
miRNA:   3'- agaGUGCG---------UCGUGGACCG-GGUCGccu -5'
19734 3' -60.8 NC_004687.1 + 140322 0.67 0.649089
Target:  5'- -gUCACGCGGUggACCucgucuucgaggUGGCCgaucaGGCGGAa -3'
miRNA:   3'- agAGUGCGUCG--UGG------------ACCGGg----UCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.