miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19734 5' -57.3 NC_004687.1 + 155084 1.09 0.002259
Target:  5'- uUGUCUGCCGGGGCGAACAUCGGCAUGa -3'
miRNA:   3'- -ACAGACGGCCCCGCUUGUAGCCGUAC- -5'
19734 5' -57.3 NC_004687.1 + 43209 0.76 0.327958
Target:  5'- cGcUUGCCGGaGGCGuggcccguGGCGUCGGCAUGg -3'
miRNA:   3'- aCaGACGGCC-CCGC--------UUGUAGCCGUAC- -5'
19734 5' -57.3 NC_004687.1 + 11537 0.75 0.374455
Target:  5'- aGUUcggGuCCGGGGCGGugAUCGGCGg- -3'
miRNA:   3'- aCAGa--C-GGCCCCGCUugUAGCCGUac -5'
19734 5' -57.3 NC_004687.1 + 136148 0.73 0.45209
Target:  5'- cGUCgugggugGCCGGGGCGGugGU-GGCgAUGg -3'
miRNA:   3'- aCAGa------CGGCCCCGCUugUAgCCG-UAC- -5'
19734 5' -57.3 NC_004687.1 + 113189 0.73 0.45209
Target:  5'- aGUCcGCCGGGGacaGAcgcuCGUCGGCGUc -3'
miRNA:   3'- aCAGaCGGCCCCg--CUu---GUAGCCGUAc -5'
19734 5' -57.3 NC_004687.1 + 27830 0.73 0.479863
Target:  5'- -cUCUGCCGGaGGCGGG-GUCGGCGc- -3'
miRNA:   3'- acAGACGGCC-CCGCUUgUAGCCGUac -5'
19734 5' -57.3 NC_004687.1 + 35013 0.72 0.518133
Target:  5'- aGUCUGCCGaccaGGGUGAcGCAgcggCGGCAg- -3'
miRNA:   3'- aCAGACGGC----CCCGCU-UGUa---GCCGUac -5'
19734 5' -57.3 NC_004687.1 + 3858 0.72 0.531816
Target:  5'- gGUCggugGCCGGGGUggcugggcccuuggcGAGCAccUCGGCAg- -3'
miRNA:   3'- aCAGa---CGGCCCCG---------------CUUGU--AGCCGUac -5'
19734 5' -57.3 NC_004687.1 + 40861 0.71 0.557557
Target:  5'- ---gUGCCGGGGUGGGCGgucCGGCcUGa -3'
miRNA:   3'- acagACGGCCCCGCUUGUa--GCCGuAC- -5'
19734 5' -57.3 NC_004687.1 + 106895 0.71 0.567555
Target:  5'- -aUCUGCUGGGGCG-GCAUgGGUg-- -3'
miRNA:   3'- acAGACGGCCCCGCuUGUAgCCGuac -5'
19734 5' -57.3 NC_004687.1 + 100225 0.71 0.587677
Target:  5'- --cCUGCCGGGGCGucCAUCaGCcgAUGa -3'
miRNA:   3'- acaGACGGCCCCGCuuGUAGcCG--UAC- -5'
19734 5' -57.3 NC_004687.1 + 133196 0.7 0.618083
Target:  5'- cGUCgacagcgGCCagcaGGGCGAGCAgaUCGGCAg- -3'
miRNA:   3'- aCAGa------CGGc---CCCGCUUGU--AGCCGUac -5'
19734 5' -57.3 NC_004687.1 + 61508 0.7 0.622148
Target:  5'- cUGUCgcagaucucgcaggGCUGGGGCGGGCAgagcucCGGCGg- -3'
miRNA:   3'- -ACAGa-------------CGGCCCCGCUUGUa-----GCCGUac -5'
19734 5' -57.3 NC_004687.1 + 96917 0.7 0.638417
Target:  5'- gUGUcCUGCCGGGGUGuAGCG--GGCAg- -3'
miRNA:   3'- -ACA-GACGGCCCCGC-UUGUagCCGUac -5'
19734 5' -57.3 NC_004687.1 + 119198 0.7 0.648581
Target:  5'- gGUCuUGcCCGGGGCcugcGGGcCAUCGGCGUc -3'
miRNA:   3'- aCAG-AC-GGCCCCG----CUU-GUAGCCGUAc -5'
19734 5' -57.3 NC_004687.1 + 106918 0.69 0.678962
Target:  5'- ----cGCCGGGGCGGGCGcgggUGGCGc- -3'
miRNA:   3'- acagaCGGCCCCGCUUGUa---GCCGUac -5'
19734 5' -57.3 NC_004687.1 + 108473 0.69 0.709001
Target:  5'- aGUCcugGCC-GGGUGGGCAgUCGGCAg- -3'
miRNA:   3'- aCAGa--CGGcCCCGCUUGU-AGCCGUac -5'
19734 5' -57.3 NC_004687.1 + 91557 0.68 0.72872
Target:  5'- gGUCcGCCGGGaagaugcgccgcGCGAugcagcgguugGCGUCGGCAc- -3'
miRNA:   3'- aCAGaCGGCCC------------CGCU-----------UGUAGCCGUac -5'
19734 5' -57.3 NC_004687.1 + 28196 0.68 0.748109
Target:  5'- gGUCUGggugcaccuguaCgGGGGCGAGCAggaCGGC-UGg -3'
miRNA:   3'- aCAGAC------------GgCCCCGCUUGUa--GCCGuAC- -5'
19734 5' -57.3 NC_004687.1 + 37696 0.68 0.756707
Target:  5'- --cUUGaCCGGGGCGGACAggccgcgacggugUCGGUAa- -3'
miRNA:   3'- acaGAC-GGCCCCGCUUGU-------------AGCCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.